Commits · 8f72cc1fd2c93606ec7db470e1d17ce1ce1d2337 · Anne-Sophie Denommé-Pichon / STR · GitLab

10 Jun, 2021 2 commits
- Uncomment part deleting transfered bam bai files · 8f72cc1f
  Anne-Sophie Denommé-Pichon authored Jun 11, 2021
  
  8f72cc1f
- Handle path to Python 3 · 3126d143
  Anne-Sophie Denommé-Pichon authored Jun 11, 2021
  
  3126d143
18 Sep, 2020 1 commit
- Handle local architecture and fix no transfer mode · 806b712b
  Anne-Sophie Denommé-Pichon authored Sep 18, 2020
  
  806b712b
30 Jul, 2020 2 commits
- Update paths for results scripts · c1243e16
  Anne-Sophie Denommé-Pichon authored Jul 31, 2020
  
  c1243e16
- Add sample list file as argument · 4b011eed
  Anne-Sophie Denommé-Pichon authored Jul 31, 2020
  
  4b011eed
29 Jul, 2020 1 commit
- Place output files in specific directories · 1e638b24
  Anne-Sophie Denommé-Pichon authored Jul 29, 2020
  
  1e638b24
26 Jul, 2020 2 commits
- Handle launching scripts from out of their directory · 77c7b4f9
  Anne-Sophie Denommé-Pichon authored Jul 26, 2020
  
  77c7b4f9
- Create log files in the output directory · 62136d0d
  Anne-Sophie Denommé-Pichon authored Jul 26, 2020
  
  62136d0d
15 Jul, 2020 1 commit
- Remove email address · 365a361c
  Anne-Sophie Denommé-Pichon authored Jul 15, 2020
  
  365a361c
22 Jun, 2020 1 commit
- Fix command in README.md · d7078bab
  Anne-Sophie Denommé-Pichon authored Jun 22, 2020
  
  d7078bab
21 Jun, 2020 4 commits
- Fix comment in pipeline.sh · e31af448
  Anne-Sophie Denommé-Pichon authored Jun 21, 2020
  
  e31af448
- Add sample.list example · 22d3c074
  Anne-Sophie Denommé-Pichon authored Jun 21, 2020
  
  22d3c074
- Ignore empty lines in sample.list · b2154f22
  Anne-Sophie Denommé-Pichon authored Jun 21, 2020
  
  b2154f22
- Add result cache to handle only new samples & group results scripts in one · fcbfaac5
  Anne-Sophie Denommé-Pichon authored Jun 21, 2020
  
  fcbfaac5
08 Jun, 2020 1 commit
- Fix some bugs · c5833135
  Anne-Sophie Denommé-Pichon authored Jun 08, 2020
  
  c5833135
07 Jun, 2020 9 commits
- Fix some bugs · adff611b
  Anne-Sophie Denommé-Pichon authored Jun 08, 2020
  
  adff611b
- Make results pipeline more generic · 2b4c77e7
  Anne-Sophie Denommé-Pichon authored Jun 07, 2020
  
  2b4c77e7
- Make EHDN pipeline more generic · cc421cc2
  Anne-Sophie Denommé-Pichon authored Jun 07, 2020
  
  cc421cc2
- Remove unused scripts and replace triplets by str · ca848b6f
  Anne-Sophie Denommé-Pichon authored Jun 07, 2020
  
  ca848b6f
- Rename wrapper_ehdn.sh to wrapper_ehdn_profile.sh · b72da0c7
  Anne-Sophie Denommé-Pichon authored Jun 07, 2020
  
  b72da0c7
- Update TODO.org · 16f9d1ec
  Anne-Sophie Denommé-Pichon authored Jun 07, 2020
  
  16f9d1ec
- Create config.sh and TODO.org · f89dc48a
  Anne-Sophie Denommé-Pichon authored Jun 07, 2020
  
  f89dc48a
- Handle optional transfer from an archive directory · e8755663
  Anne-Sophie Denommé-Pichon authored Jun 07, 2020
  
  e8755663
- Add variables to make scripts more generic · fa20a9b3
  Anne-Sophie Denommé-Pichon authored Jun 07, 2020
  
  fa20a9b3
06 Jun, 2020 5 commits
- Remove scripts for HipSTR STRetch STRscan LobSTR · 6cccde09
  Anne-Sophie Denommé-Pichon authored Jun 07, 2020
  
  6cccde09
- Merge branch 'master' of gitlab.gad-bioinfo.org:Anne-Sophie/triplets · 9eeb4779
  Anne-Sophie Denommé-Pichon authored Jun 07, 2020
  
  9eeb4779
- Remove commands creating file.failed on error · 2d1b505d
  Anne-Sophie Denommé-Pichon authored Jun 07, 2020
  
  2d1b505d
- Update headers · 14be1720
  Anne-Sophie Denommé-Pichon authored Jun 06, 2020
  
  14be1720
- Change variable names · e4c144bc
  Anne-Sophie Denommé-Pichon authored Jun 06, 2020
  
  e4c144bc
16 Feb, 2020 7 commits
- Update README.md · 3cd89267
  Anne-Sophie Denommé-Pichon authored Feb 16, 2020
  
  3cd89267
- Update README.md · c4d1bd33
  Anne-Sophie Denommé-Pichon authored Feb 16, 2020
  
  c4d1bd33
- Move STR plot scripts with other scripts · 63e81b42
  Anne-Sophie Denommé-Pichon authored Feb 16, 2020
  
  63e81b42
- Update README · 64c31165
  Anne-Sophie Denommé-Pichon authored Feb 16, 2020
  
  64c31165
- Create script to launch ehdn outlier analysis on SGE · 4c33f449
  Anne-Sophie Denommé-Pichon authored Feb 16, 2020
  
  4c33f449
- Add sample name to SGE job · 3df41650
  Anne-Sophie Denommé-Pichon authored Feb 16, 2020
  
  3df41650
- Handle ehdn outlier analyses on SGE for all patients · c7b5da6e
  Anne-Sophie Denommé-Pichon authored Feb 16, 2020
  
  c7b5da6e
15 Feb, 2020 4 commits
- Fix Markdown · 35460f6a
  Anne-Sophie Denommé-Pichon authored Feb 15, 2020
  
  35460f6a
- Fix Markdown · de0b4120
  Anne-Sophie Denommé-Pichon authored Feb 15, 2020
  
  de0b4120
- Fix Markdown · 2740da81
  Anne-Sophie Denommé-Pichon authored Feb 15, 2020
  
  2740da81
- Update .gitignore · 274e0ce8
  Anne-Sophie Denommé-Pichon authored Feb 15, 2020
  
  274e0ce8