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Anne-Sophie Denommé-Pichon
STR
Commits
2d1b505d
Commit
2d1b505d
authored
Jun 07, 2020
by
Anne-Sophie Denommé-Pichon
Browse files
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Remove commands creating file.failed on error
parent
14be1720
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11 changed files
with
0 additions
and
34 deletions
+0
-34
wrapper_delete.sh
wrapper_delete.sh
+0
-2
wrapper_ehdn.sh
wrapper_ehdn.sh
+0
-3
wrapper_ehdn_outlier.sh
wrapper_ehdn_outlier.sh
+0
-5
wrapper_expansionhunter.sh
wrapper_expansionhunter.sh
+0
-3
wrapper_gangstr.sh
wrapper_gangstr.sh
+0
-3
wrapper_hipstr.sh
wrapper_hipstr.sh
+0
-3
wrapper_lobstr.sh
wrapper_lobstr.sh
+0
-3
wrapper_stretch.sh
wrapper_stretch.sh
+0
-3
wrapper_strscan.sh
wrapper_strscan.sh
+0
-3
wrapper_transfer.sh
wrapper_transfer.sh
+0
-3
wrapper_tredparse.sh
wrapper_tredparse.sh
+0
-3
No files found.
wrapper_delete.sh
View file @
2d1b505d
...
...
@@ -23,7 +23,6 @@ if [ -z "$SAMPLE" ]
then
echo
"Sample is not specified"
echo
"
$(
date
+
"%F_%H-%M-%S"
)
: END"
touch
delete.failed
exit
1
fi
...
...
@@ -40,7 +39,6 @@ echo "delete exit code : $delete_exitcode"
if
[
$delete_exitcode
!=
0
]
then
echo
"
$(
date
+
"%F_%H-%M-%S"
)
: END"
touch
delete.failed
exit
1
fi
...
...
wrapper_ehdn.sh
View file @
2d1b505d
...
...
@@ -24,7 +24,6 @@ if [ ! -f "$INPUTFILE" ]
then
echo
"Input file '
$INPUTFILE
' does not exist"
echo
"
$(
date
+
"%F_%H-%M-%S"
)
: END"
touch
ehdn.failed
exit
1
fi
...
...
@@ -33,7 +32,6 @@ if [ -z "$OUTPUTPREFIX" ]
then
echo
"Output prefix is not specified"
echo
"
$(
date
+
"%F_%H-%M-%S"
)
: END"
touch
ehdn.failed
exit
1
fi
...
...
@@ -67,7 +65,6 @@ echo "ehdn exit code : $ehdn_exitcode"
if
[
$ehdn_exitcode
!=
0
]
then
echo
"
$(
date
+
"%F_%H-%M-%S"
)
: END"
touch
ehdn.failed
exit
1
fi
...
...
wrapper_ehdn_outlier.sh
View file @
2d1b505d
...
...
@@ -27,7 +27,6 @@ if [ -z "$CASE" ]
then
echo
"Dijen is not specified"
echo
"
$(
date
+
"%F_%H-%M-%S"
)
: END"
touch
ehdn_outlier.failed
exit
1
fi
...
...
@@ -53,7 +52,6 @@ echo "ehdn_outlier exit code : $ehdn_outlier_exitcode"
if
[
$ehdn_outlier_exitcode
!=
0
]
then
echo
"
$(
date
+
"%F_%H-%M-%S"
)
: END"
touch
ehdn_outlier.failed
exit
1
fi
...
...
@@ -69,7 +67,6 @@ echo "ehdn_outlier exit code : $ehdn_outlier_exitcode"
if
[
$ehdn_outlier_exitcode
!=
0
]
then
echo
"
$(
date
+
"%F_%H-%M-%S"
)
: END"
touch
ehdn_outlier.failed
exit
1
fi
...
...
@@ -85,7 +82,6 @@ echo "ehdn_outlier exit code : $ehdn_outlier_exitcode"
if
[
$ehdn_outlier_exitcode
!=
0
]
then
echo
"
$(
date
+
"%F_%H-%M-%S"
)
: END"
touch
ehdn_outlier.failed
exit
1
fi
...
...
@@ -102,7 +98,6 @@ echo "ehdn_outlier exit code : $ehdn_outlier_exitcode"
if
[
$ehdn_outlier_exitcode
!=
0
]
then
echo
"
$(
date
+
"%F_%H-%M-%S"
)
: END"
touch
ehdn_outlier.failed
exit
1
fi
...
...
wrapper_expansionhunter.sh
View file @
2d1b505d
...
...
@@ -24,7 +24,6 @@ if [ ! -f "$INPUTFILE" ]
then
echo
"Input file '
$INPUTFILE
' does not exist"
echo
"
$(
date
+
"%F_%H-%M-%S"
)
: END"
touch
expansionhunter.failed
exit
1
fi
...
...
@@ -33,7 +32,6 @@ if [ -z "$OUTPUTPREFIX" ]
then
echo
"Output prefix is not specified"
echo
"
$(
date
+
"%F_%H-%M-%S"
)
: END"
touch
expansionhunter.failed
exit
1
fi
...
...
@@ -65,7 +63,6 @@ echo "expansionhunter exit code : $expansionhunter_exitcode"
if
[
$expansionhunter_exitcode
!=
0
]
then
echo
"
$(
date
+
"%F_%H-%M-%S"
)
: END"
touch
expansionhunter.failed
exit
1
fi
...
...
wrapper_gangstr.sh
View file @
2d1b505d
...
...
@@ -23,7 +23,6 @@ if [ ! -f "$INPUTFILE" ]
then
echo
"Input file '
$INPUTFILE
' does not exist"
echo
"
$(
date
+
"%F_%H-%M-%S"
)
: END"
touch
gangstr.failed
exit
1
fi
...
...
@@ -32,7 +31,6 @@ if [ -z "$OUTPUTPREFIX" ]
then
echo
"Output prefix is not specified"
echo
"
$(
date
+
"%F_%H-%M-%S"
)
: END"
touch
gangstr.failed
exit
1
fi
...
...
@@ -64,7 +62,6 @@ echo "gangstr exit code : $gangstr_exitcode"
if
[
$gangstr_exitcode
!=
0
]
then
echo
"
$(
date
+
"%F_%H-%M-%S"
)
: END"
touch
gangstr.failed
exit
1
fi
...
...
wrapper_hipstr.sh
View file @
2d1b505d
...
...
@@ -31,7 +31,6 @@ if [ ! -f "$INPUTFILE" ]
then
echo
"Input file '
$INPUTFILE
' does not exist"
echo
"
$(
date
+
"%F_%H-%M-%S"
)
: END"
touch
hipstr.failed
exit
1
fi
...
...
@@ -40,7 +39,6 @@ if [ -z "$OUTPUTFILE" ]
then
echo
"Output file is not specified"
echo
"
$(
date
+
"%F_%H-%M-%S"
)
: END"
touch
hipstr.failed
exit
1
fi
...
...
@@ -60,7 +58,6 @@ echo "hipstr exit code : $hipstr_exitcode"
if
[
$hipstr_exitcode
!=
0
]
then
echo
"
$(
date
+
"%F_%H-%M-%S"
)
: END"
touch
hipstr.failed
exit
1
fi
...
...
wrapper_lobstr.sh
View file @
2d1b505d
...
...
@@ -31,7 +31,6 @@ if [ ! -f "$INPUTFILE" ]
then
echo
"Input file '
$INPUTFILE
' does not exist"
echo
"
$(
date
+
"%F_%H-%M-%S"
)
: END"
touch
lobstr.failed
exit
1
fi
...
...
@@ -40,7 +39,6 @@ if [ -z "$OUTPUTPREFIX" ]
then
echo
"Output prefix is not specified"
echo
"
$(
date
+
"%F_%H-%M-%S"
)
: END"
touch
lobstr.failed
exit
1
fi
...
...
@@ -70,7 +68,6 @@ echo "lobstr exit code : $lobstr_exitcode"
if
[
$lobstr_exitcode
!=
0
]
then
echo
"
$(
date
+
"%F_%H-%M-%S"
)
: END"
touch
lobstr.failed
exit
1
fi
...
...
wrapper_stretch.sh
View file @
2d1b505d
...
...
@@ -24,7 +24,6 @@ if [ ! -f "$INPUTFILE" ]
then
echo
"Input file '
$INPUTFILE
' does not exist"
echo
"
$(
date
+
"%F_%H-%M-%S"
)
: END"
touch
stretch.failed
exit
1
fi
...
...
@@ -33,7 +32,6 @@ if [ -z "$OUTPUTPREFIX" ]
then
echo
"Output prefix is not specified"
echo
"
$(
date
+
"%F_%H-%M-%S"
)
: END"
touch
stretch.failed
exit
1
fi
...
...
@@ -56,7 +54,6 @@ echo "stretch exit code : $stretch_exitcode"
if
[
$stretch_exitcode
!=
0
]
then
echo
"
$(
date
+
"%F_%H-%M-%S"
)
: END"
touch
stretch.failed
exit
1
fi
...
...
wrapper_strscan.sh
View file @
2d1b505d
...
...
@@ -31,7 +31,6 @@ if [ ! -f "$INPUTFILE" ]
then
echo
"Input file '
$INPUTFILE
' does not exist"
echo
"
$(
date
+
"%F_%H-%M-%S"
)
: END"
touch
strscan.failed
exit
1
fi
...
...
@@ -40,7 +39,6 @@ if [ -z "$OUTPUTPREFIX" ]
then
echo
"Output prefix is not specified"
echo
"
$(
date
+
"%F_%H-%M-%S"
)
: END"
touch
strscan.failed
exit
1
fi
...
...
@@ -61,7 +59,6 @@ echo "strscan exit code : $strscan_exitcode"
if
[
$strscan_exitcode
!=
0
]
then
echo
"
$(
date
+
"%F_%H-%M-%S"
)
: END"
touch
gangstr.failed
exit
1
fi
...
...
wrapper_transfer.sh
View file @
2d1b505d
...
...
@@ -24,7 +24,6 @@ if [ ! -f "$INPUTFILE" ]
then
echo
"Input file '
$INPUTFILE
' does not exist"
echo
"
$(
date
+
"%F_%H-%M-%S"
)
: END"
touch
transfer.failed
exit
1
fi
...
...
@@ -33,7 +32,6 @@ if [ -z "$OUTPUTDIR" ]
then
echo
"Output directory is not specified"
echo
"
$(
date
+
"%F_%H-%M-%S"
)
: END"
touch
transfer.failed
exit
1
fi
...
...
@@ -51,7 +49,6 @@ echo "transfer exit code : $transfer_exitcode"
if
[
$transfer_exitcode
!=
0
]
then
echo
"
$(
date
+
"%F_%H-%M-%S"
)
: END"
touch
transfer.failed
exit
1
fi
...
...
wrapper_tredparse.sh
View file @
2d1b505d
...
...
@@ -24,7 +24,6 @@ if [ ! -f "$INPUTFILE" ]
then
echo
"Input file '
$INPUTFILE
' does not exist"
echo
"
$(
date
+
"%F_%H-%M-%S"
)
: END"
touch
tredparse.failed
exit
1
fi
...
...
@@ -33,7 +32,6 @@ if [ -z "$OUTPUTDIR" ]
then
echo
"Output directory is not specified"
echo
"
$(
date
+
"%F_%H-%M-%S"
)
: END"
touch
tredparse.failed
exit
1
fi
...
...
@@ -51,7 +49,6 @@ echo "tredparse exit code : $tredparse_exitcode"
if
[
$tredparse_exitcode
!=
0
]
then
echo
"
$(
date
+
"%F_%H-%M-%S"
)
: END"
touch
tredparse.failed
exit
1
fi
...
...
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