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Anne-Sophie Denommé-Pichon
STR
Commits
c4d1bd33
Commit
c4d1bd33
authored
Feb 16, 2020
by
Anne-Sophie Denommé-Pichon
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README.md
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c4d1bd33
...
...
@@ -8,7 +8,7 @@
1.
Create
`genomes.list`
2.
Specify output file in
`launch_pipeline.sh`
. Warning, don't overwrite existing files
3.
Launch
launch_pipeline.sh
:
`nohup ./launch_pipeline.sh &`
. Dependencies :
3.
Launch
`launch_pipeline.sh`
:
`nohup ./launch_pipeline.sh &`
. Dependencies :
-
`genomes.list`
-
`pipeline.sh`
-
`wrapper_delete.sh`
...
...
@@ -17,4 +17,9 @@
-
`wrapper_gangstre.sh`
-
`wrapper_transfer.sh`
-
`wrapper_tredparse.sh`
4.
Launch
`getResults.py`
. Warning, don't overwrite existing files.
\ No newline at end of file
4.
Launch
`getResults.py`
. Warning, don't overwrite existing files.
5.
Specify input directory in
`triplets_plotly.py`
and in
`launch_triplets_plotly.sh`
.
6.
Launch
`launch_triplets_plotly.sh`
.
7.
Specify input directory in
`triplets_outliers.py`
and in
`launch_triplets_outliers.sh`
.
8.
Change z-score threshold if necessary in
`triplets_outliers.py`
.
9.
Launch
`launch_triplets_outliers.sh`
.
\ No newline at end of file
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