Update README.md

parent 64c31165
......@@ -8,7 +8,7 @@
1. Create `genomes.list`
2. Specify output file in `launch_pipeline.sh`. Warning, don't overwrite existing files
3. Launch launch_pipeline.sh : `nohup ./launch_pipeline.sh &`. Dependencies :
3. Launch `launch_pipeline.sh` : `nohup ./launch_pipeline.sh &`. Dependencies :
- `genomes.list`
- `pipeline.sh`
- `wrapper_delete.sh`
......@@ -17,4 +17,9 @@
- `wrapper_gangstre.sh`
- `wrapper_transfer.sh`
- `wrapper_tredparse.sh`
4. Launch `getResults.py`. Warning, don't overwrite existing files.
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4. Launch `getResults.py`. Warning, don't overwrite existing files.
5. Specify input directory in `triplets_plotly.py` and in `launch_triplets_plotly.sh`.
6. Launch `launch_triplets_plotly.sh`.
7. Specify input directory in `triplets_outliers.py` and in `launch_triplets_outliers.sh`.
8. Change z-score threshold if necessary in `triplets_outliers.py`.
9. Launch `launch_triplets_outliers.sh`.
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