qsub -wd"$WD"-pe smp 1 -o"$OUTPUTDIR"-e"$OUTPUTDIR"-q"$COMPUTE_QUEUE"-N"delete_$SAMPLE"-hold_jid"eh_$SAMPLE,tredparse_$SAMPLE,gangstr_$SAMPLE,ehdn_$SAMPLE"-sync y -vSAMPLE="$SAMPLE",LOGFILE="$OUTPUTDIR/delete_$DATE.log""$WD/wrapper_delete.sh"
else
qsub -wd"$WD"-pe smp 1 -o"$OUTPUTDIR"-e"$OUTPUTDIR"-q"$COMPUTE_QUEUE"-N"delete_$SAMPLE"-hold_jid"eh_$SAMPLE,tredparse_$SAMPLE,gangstr_$SAMPLE,ehdn_$SAMPLE"-sync y -b y echo"Nothing to delete."
qsub -wd"$WD"-pe smp 1 -o"$LOGDIR"-e"$LOGDIR"-q"$COMPUTE_QUEUE"-N"delete_$SAMPLE"-hold_jid"eh_$SAMPLE,tredparse_$SAMPLE,gangstr_$SAMPLE,ehdn_$SAMPLE"-sync y -b y echo"Nothing to delete."
## Description: a wrapper for qsubing bam transfer for STR pipeline
## Usage: qsub -pe smp 1 -v INPUTFILE=<path to the bam file>,TRANSFER_OUTPUTDIR=<output directory>,[LOGFILE=<path to the log file>] wrapper_transfer.sh