Commits · 8ea2c946eae3c637121ff148d584c1532057f94b · gad-public / singularity · GitLab

29 Jan, 2025 1 commit
- Add installation of openssl10 for libcrypto.so.10 in python singularity image · 08717818
  Valentin Vautrot authored 1 month ago
  
  08717818
23 Jan, 2025 1 commit
- Modify setup and gad_version variable provision (here 2.11.0_python3) in python3.9 def file · 01ba0654
  Valentin Vautrot authored 1 month ago
  
  01ba0654
17 Jan, 2025 4 commits
- Add modified-thompson-tau-test for str pipeline · 1eb92924
  Valentin Vautrot authored 1 month ago
  
  1eb92924
- Add version control for python pip packages · 2f83e505
  Valentin Vautrot authored 1 month ago
  
  2f83e505
- Make gad version variable available in a singularity-compatible manner and modify help · 56e48ac5
  Valentin Vautrot authored 1 month ago
  
  56e48ac5
- Retrieve custom pipeline python packages from remote git clone instead of own's local repository · 5a071cbe
  Valentin Vautrot authored 1 month ago
  
  5a071cbe
22 Nov, 2023 2 commits
- Minor modifications in annotations and help · 9812b3fe
  Valentin Vautrot authored 1 year ago
  
  9812b3fe
- Minor modifications in annotations and help · 46eddb40
  Valentin Vautrot authored 1 year ago
  
  46eddb40
05 Oct, 2023 1 commit
- Add more detail to %help section, simplify and correct %labels and %test section · c636cfd7
  Valentin Vautrot authored 1 year ago
  
  c636cfd7
03 Oct, 2023 1 commit
- suppressing useless packages and adding OS version info · ec5e1c7c
  Valentin Vautrot authored 1 year ago
  
  ec5e1c7c
29 Sep, 2023 2 commits
- adding info in %labels and %help sections · 6f5a90de
  Valentin Vautrot authored 1 year ago
  
  6f5a90de
- cleaning unecessary command lines for previous installations attempts (rmats, lumpy) · 0d67915e
  Valentin Vautrot authored 1 year ago
  
  0d67915e
28 Sep, 2023 1 commit
- Added all python packages needed to run full_wes.sh, full_wgs.sh and… · 0cd8b53e
  Valentin Vautrot authored 1 year ago
```
Added all python packages needed to run full_wes.sh, full_wgs.sh and full_RNAseq.sh, and trying to install lumpy
```
  0cd8b53e
26 Sep, 2023 1 commit
- Added rMATS installation and required environment for full_rna.sh · 03275bbd
  Valentin Vautrot authored 1 year ago
  
  03275bbd
18 Sep, 2023 1 commit
- Added python 3.9 packages installation verified up until the end of full_wes.sh… · 29b6c61d
  Valentin Vautrot authored 1 year ago
```
Added python 3.9 packages installation verified up until the end of full_wes.sh as in version 2.10.0 of gadpipeline
```
  29b6c61d
15 Sep, 2023 1 commit
- Added python 3.9 packages installation up until the end of the CNV section in full_wes v.2.10.0 · 1c716329
  Valentin Vautrot authored 1 year ago
  
  1c716329
14 Sep, 2023 3 commits
- Added python 3.9 packages installation up until the end of the mito pipeline in full_wes v.2.10.0 · 61c38963
  Valentin Vautrot authored 1 year ago
  
  61c38963
- Update python_3.9 · 19b5fe24
  Valentin Vautrot authored 1 year ago
  
  19b5fe24
- Update Python3.11_wes.def · 7b5795e4
  Valentin Vautrot authored 1 year ago
  
  7b5795e4
13 Sep, 2023 1 commit
- Added python 3.9 installation without any other version of python. · 7de0cacf
  Valentin Vautrot authored 1 year ago
  
  7de0cacf
12 Sep, 2023 1 commit
- Upload New File : definition file for python environment in full_wes pipeline 2.10.0 · f7c865ff
  Valentin Vautrot authored 1 year ago
  
  f7c865ff