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Commit 2f83e505 authored by Valentin Vautrot's avatar Valentin Vautrot
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Add version control for python pip packages

parent 56e48ac5
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Showing with 7 additions and 7 deletions
python_3.9.def
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......@@ -41,15 +41,15 @@ mv -v /data/gadpipeline/common/GeneralTools.py /data/gadpipeline/common/LabkeyTo
# install python pip packages
pip3.9 install --upgrade -t /usr/lib/python3.9/site-packages/ labkey==1.4.0
pip3.9 install --upgrade -t /usr/lib/python3.9/site-packages/ numpy
pip3.9 install --upgrade -t /usr/lib/python3.9/site-packages/ matplotlib
pip3.9 install --upgrade -t /usr/lib/python3.9/site-packages/ pandas
pip3.9 install --upgrade -t /usr/lib/python3.9/site-packages/ numpy==2.0.2
pip3.9 install --upgrade -t /usr/lib/python3.9/site-packages/ matplotlib==3.9.4
pip3.9 install --upgrade -t /usr/lib/python3.9/site-packages/ pandas==2.2.3
# pip3.9 install --upgrade -t /usr/lib/python3.9/site-packages/ plotly
# is causing an error due to plotly.plotly module being deprecated in python3.9. chart-studio package (with the chart_studio.plotly module) is to be used in replacement.
pip3.9 install --upgrade -t /usr/lib/python3.9/site-packages/ chart-studio
pip3.9 install --upgrade -t /usr/lib/python3.9/site-packages/ scipy
pip3.9 install --upgrade -t /usr/lib/python3.9/site-packages/ pyvcf
pip3.9 install --upgrade -t /usr/lib/python3.9/site-packages/ simplejson
pip3.9 install --upgrade -t /usr/lib/python3.9/site-packages/ chart-studio==1.1.0
pip3.9 install --upgrade -t /usr/lib/python3.9/site-packages/ scipy==1.13.1
pip3.9 install --upgrade -t /usr/lib/python3.9/site-packages/ pyvcf==0.6.8
pip3.9 install --upgrade -t /usr/lib/python3.9/site-packages/ simplejson==3.19.3
#cleaning
rm -rf /data/
......
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