Merge branch 'master' of gitlab.gad-bioinfo.org:gad-public/vihgo into master

a04b957e · Yannis Duffourd · a9fa4b58 · b011f58c · a04b957e · a04b957e
Commit a04b957e authored Dec 08, 2020 by Yannis Duffourd
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Vihgo.cpp cpp/Vihgo.cpp +0 -0

main.cpp cpp/main.cpp +2 -2

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--- a/cpp/Vihgo.cpp
+++ b/cpp/Vihgo.cpp
--- a/cpp/main.cpp
+++ b/cpp/main.cpp
@@ -66,8 +66,8 @@ int main(int argc, char* argv[])
 	("gene,g" ,  po::value<string>( &geneFile ) , "Gene annotation file related to reference genome provided." )

 	("depth,d", po::value<int>( &depthThreshold )->default_value(50), "Depth treshold to call a variant. (optional)")
-	("ratio,a" , po::value<double>( &ratioThreshold )->default_value(0.1) , "Minimum ratio of alt reads to take in account a mutation. (optional)" )
-	("pvalue,p" , po::value<double>( &pvalueThreshold )->default_value(0.05) , "pvalue threshold from FET to take in account a mutation. (optional)" )
+	("ratio,a" , po::value<double>( &ratioThreshold )->default_value(0.1) , "Minimum ratio of alt reads to consider a mutation. (optional)" )
+	("pvalue,p" , po::value<double>( &pvalueThreshold )->default_value(0.05) , "pvalue threshold from FET to consider a mutation. (optional)" )
 	("stop,s" , "Activate stop codon detction." )

 	("thread,t", po::value<int>( &nbThread )->default_value(50), "Number of thread to use. (NYI)")