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  • v0.3   version 0.3
    d1f5ff56 · deleting unversion file ·

    Vihgo v0.3 Vihgo can now work on any virus sequencing data. You need to provide a reference genome (fasta format), and a gff file for genome features identification.

    • Cs generation
    • Codon table generation
    • Variation file generation
    • Annotation has been "removed", need a third party tool
    • GFF support for genome annotation (genes and prot)
    • Can now perform the wariant calling with or without control sample
    • Tested on VIH and SarsCov2, fully working
    • Insertions / deletions are not yet detected (dev branch)
    • Unit tests are in active implementation