Vihgo v0.3 Vihgo can now work on any virus sequencing data. You need to provide a reference genome (fasta format), and a gff file for genome features identification.

• Cs generation
• Codon table generation
• Variation file generation
• Annotation has been "removed", need a third party tool
• GFF support for genome annotation (genes and prot)
• Can now perform the wariant calling with or without control sample
• Tested on VIH and SarsCov2, fully working
• Insertions / deletions are not yet detected (dev branch)
• Unit tests are in active implementation