Commits · master · gad-public / cnvCallerGPU

21 Nov, 2024 1 commit
- Modify filter · fbfb9bf7
  Theo Serralta authored Nov 21, 2024
  
  fbfb9bf7
07 Nov, 2024 7 commits
- Remove files · 35e59a9c
  Theo Serralta authored Nov 07, 2024
  
  35e59a9c
- Remove License · db1128b8
  Theo Serralta authored Nov 07, 2024
  
  db1128b8
- Rename README · 3557bc39
  Theo Serralta authored Nov 07, 2024
  
  3557bc39
- Add new README · ad1eeb2e
  Theo Serralta authored Nov 07, 2024
  
  ad1eeb2e
- Remove Readme · 803c9cd2
  Theo Serralta authored Nov 07, 2024
  
  803c9cd2
- Missing argument display_results_vcf · cafc96e2
  Theo Serralta authored Nov 07, 2024
  
  cafc96e2
- Wrong variable in compute_mean_std · 9468f249
  Theo Serralta authored Nov 07, 2024
  
  9468f249
06 Nov, 2024 4 commits
- Add requirements on header · 09497ec1
  Theo Serralta authored Nov 06, 2024
  
  09497ec1
- Add docstrings · f3fb9d8e
  Theo Serralta authored Nov 06, 2024
  
  f3fb9d8e
- Add docstrings · cba4fa90
  Theo Serralta authored Nov 06, 2024
  
  cba4fa90
- Full algorithm in one file · c531573b
  Theo Serralta authored Nov 06, 2024
  
  c531573b
05 Nov, 2024 5 commits
- Moove files from git · 51ebcd12
  Theo Serralta authored Nov 05, 2024
  
  51ebcd12
- Remove files from git · 29e1ab0e
  Theo Serralta authored Nov 05, 2024
  
  29e1ab0e
- Moove file from git · 2fae1bf6
  Theo Serralta authored Nov 05, 2024
  
  2fae1bf6
- Moove file from git · 6e2cbf09
  Theo Serralta authored Nov 05, 2024
  
  6e2cbf09
- Remote files from git · 324f6f25
  Theo Serralta authored Nov 05, 2024
  
  324f6f25
27 Aug, 2024 1 commit
- Add new normalisation method · 2d7ecfcf
  Theo Serralta authored Aug 27, 2024
  
  2d7ecfcf
05 Aug, 2024 2 commits
- Optimisation of some functions · a0f29fab
  Theo Serralta authored Aug 05, 2024
  
  a0f29fab
- Optimisation of some functions · 676b420d
  Theo Serralta authored Aug 05, 2024
  
  676b420d
19 Jul, 2024 2 commits
- Correct normalisation (don't work) · c68a9914
  Theo Serralta authored Jul 19, 2024
  
  c68a9914
- Add some function to find pairs and splits read · 26feb9eb
  Theo Serralta authored Jul 19, 2024
  
  26feb9eb
12 Jul, 2024 2 commits
- Testing search SV in genome · b6aa9197
  Theo Serralta authored Jul 12, 2024
  
  b6aa9197
- Testing new way to normalize · 661b8284
  Theo Serralta authored Jul 12, 2024
  
  661b8284
28 Jun, 2024 1 commit
- Add faster function calcul_depth_seq · 9bb5c514
  Theo Serralta authored Jun 28, 2024
  
  9bb5c514
19 Jun, 2024 1 commit
- Formatting code and add functions · be5e1926
  Theo Serralta authored Jun 19, 2024
  
  be5e1926
12 Jun, 2024 1 commit
- Formating code · 91be97c9
  Theo Serralta authored Jun 12, 2024
  
  91be97c9
11 Jun, 2024 1 commit
- Finishing code to test on genome · 59eeb957
  Theo Serralta authored Jun 11, 2024
  
  59eeb957
07 Jun, 2024 1 commit
- Add some functions · 74f8d0ae
  Theo Serralta authored Jun 07, 2024
  
  74f8d0ae
29 May, 2024 1 commit
- Change multiprocessing (don't work) · c832a6ba
  Theo Serralta authored May 29, 2024
  
  c832a6ba
17 May, 2024 1 commit
- Add parallelization (don't work) · 10941d40
  Theo Serralta authored May 17, 2024
  
  10941d40
16 May, 2024 2 commits
- Optimize function calcul_mappability · 773d7dc8
  Theo Serralta authored May 16, 2024
  
  773d7dc8
- Add code with calc of depth_seq, gc_content and mappability with GPU · 6ed38039
  Theo Serralta authored May 16, 2024
  
  6ed38039
29 Feb, 2024 1 commit
- final code to find CNV with multithreading · f55201d8
  Theo Serralta authored Feb 29, 2024
  
  f55201d8
16 Feb, 2024 1 commit
- Adding options with getopt but don't work · 70f8dbd4
  Theo Serralta authored Feb 16, 2024
  
  70f8dbd4
26 Jan, 2024 2 commits
- Just a test file · e43cf539
  Theo Serralta authored Jan 26, 2024
  
  e43cf539
- Find CNV with Read Depth method on CPU with multithreading · f5bf0f77
  Theo Serralta authored Jan 26, 2024
  
  f5bf0f77
17 Nov, 2023 1 commit
- New code to isolate high depth · 15e1fe38
  Theo Serralta authored Nov 17, 2023
  
  15e1fe38
16 Nov, 2023 2 commits
- Add some comments and new code for all seq · 5b182bf3
  Theo Serralta authored Nov 16, 2023
  
  5b182bf3
- Program to calculate depth · 5c598d30
  Theo Serralta authored Nov 16, 2023
  
  5c598d30