Skip to content
Projects
Groups
Snippets
Help
This project
Loading...
Sign in / Register
Toggle navigation
C
cnvCallerGPU
Project
Project
Details
Activity
Cycle Analytics
Repository
Repository
Files
Commits
Branches
Tags
Contributors
Graph
Compare
Charts
Issues
0
Issues
0
List
Board
Labels
Milestones
Merge Requests
0
Merge Requests
0
CI / CD
CI / CD
Pipelines
Jobs
Schedules
Charts
Wiki
Wiki
Snippets
Snippets
Members
Members
Collapse sidebar
Close sidebar
Activity
Graph
Charts
Create a new issue
Jobs
Commits
Issue Boards
Open sidebar
gad-public
cnvCallerGPU
Commits
09497ec1
Commit
09497ec1
authored
4 months ago
by
Theo Serralta
Browse files
Options
Browse Files
Download
Email Patches
Plain Diff
Add requirements on header
parent
f3fb9d8e
master
kernel_adds
Hide whitespace changes
Inline
Side-by-side
Showing
1 changed file
with
1 addition
and
3 deletions
+1
-3
cnv_sv_caller_gpu.py
cnv_sv_caller_gpu.py
+1
-3
No files found.
cnv_sv_caller_gpu.py
View file @
09497ec1
...
...
@@ -6,7 +6,7 @@
## Description : This script find CNV and SV events
## Usage : python3 cnv_sv_caller_gpu.py -b <input/bamfile> -c <num_chr (int) | "All"> -w 100 -s 10 -z 1.5 -l 200 -o <output/vcf/cnv> -p <output/tsv/pairs> -m <output/tsv/splits> -e <log/file>
## Output : An events file for CNV, paired-reads and split-reads
## Requirements : python 3.0+
## Requirements : python 3.0+
, pysam, pandas, getopt, numpy, pycuda, multiprocessing, subprocess, collections
## Author : Theo.Serralta@u-bourgogne.fr | theo.serralta@gmail.com
## Creation Date : 20230928
...
...
@@ -32,8 +32,6 @@ from collections import defaultdict
from
datetime
import
datetime
# Options
def
parse_arguments
():
"""
Parse command-line arguments.
...
...
This diff is collapsed.
Click to expand it.
Write
Preview
Markdown
is supported
0%
Try again
or
attach a new file
Attach a file
Cancel
You are about to add
0
people
to the discussion. Proceed with caution.
Finish editing this message first!
Cancel
Please
register
or
sign in
to comment