New code to isolate high depth

calc_depth_mean.py

+align_file = "/home/theo/dev/git/cnvCallerGPU/test_depth.txt"
+depth_sup_mean = "/home/theo/dev/git/cnvCallerGPU/depth_sup_mean.txt"
+def calc_depth_mean(align_file):
+    with open(align_file, 'r') as file:
+        total_depth = 0
+        total_window = 0
+
+        for line in file:
+            depth_str_split = line.split()
+            depth_str_value = depth_str_split[6:]
+            total_depth += float(depth_str_value[0])
+            total_window += 1
+        mean = total_depth / total_window
+        return mean
+
+with open(depth_sup_mean, 'w') as output:
+    with open(align_file, 'r') as file:
+        mean = calc_depth_mean(align_file)  
+
+        for line in file:
+            depth_str_split = line.split()
+            depth_str_value = depth_str_split[6:]
+            
+            if float(depth_str_value[0]) > mean:
+                output.write(f"{depth_str_split[5]}: {depth_str_value[0]}\n")