Commits · 661b8284f103676ce4f741586c11f7db22ad4bef · gad-public / cnvCallerGPU

12 Jul, 2024 1 commit
- Testing new way to normalize · 661b8284
  Theo Serralta authored Jul 12, 2024
  
  661b8284
28 Jun, 2024 1 commit
- Add faster function calcul_depth_seq · 9bb5c514
  Theo Serralta authored Jun 28, 2024
  
  9bb5c514
19 Jun, 2024 1 commit
- Formatting code and add functions · be5e1926
  Theo Serralta authored Jun 19, 2024
  
  be5e1926
12 Jun, 2024 1 commit
- Formating code · 91be97c9
  Theo Serralta authored Jun 12, 2024
  
  91be97c9
11 Jun, 2024 1 commit
- Finishing code to test on genome · 59eeb957
  Theo Serralta authored Jun 11, 2024
  
  59eeb957
07 Jun, 2024 1 commit
- Add some functions · 74f8d0ae
  Theo Serralta authored Jun 07, 2024
  
  74f8d0ae
29 May, 2024 1 commit
- Change multiprocessing (don't work) · c832a6ba
  Theo Serralta authored May 29, 2024
  
  c832a6ba
17 May, 2024 1 commit
- Add parallelization (don't work) · 10941d40
  Theo Serralta authored May 17, 2024
  
  10941d40
16 May, 2024 2 commits
- Optimize function calcul_mappability · 773d7dc8
  Theo Serralta authored May 16, 2024
  
  773d7dc8
- Add code with calc of depth_seq, gc_content and mappability with GPU · 6ed38039
  Theo Serralta authored May 16, 2024
  
  6ed38039
29 Feb, 2024 1 commit
- final code to find CNV with multithreading · f55201d8
  Theo Serralta authored Feb 29, 2024
  
  f55201d8
16 Feb, 2024 1 commit
- Adding options with getopt but don't work · 70f8dbd4
  Theo Serralta authored Feb 16, 2024
  
  70f8dbd4
26 Jan, 2024 2 commits
- Just a test file · e43cf539
  Theo Serralta authored Jan 26, 2024
  
  e43cf539
- Find CNV with Read Depth method on CPU with multithreading · f5bf0f77
  Theo Serralta authored Jan 26, 2024
  
  f5bf0f77
17 Nov, 2023 1 commit
- New code to isolate high depth · 15e1fe38
  Theo Serralta authored Nov 17, 2023
  
  15e1fe38
16 Nov, 2023 2 commits
- Add some comments and new code for all seq · 5b182bf3
  Theo Serralta authored Nov 16, 2023
  
  5b182bf3
- Program to calculate depth · 5c598d30
  Theo Serralta authored Nov 16, 2023
  
  5c598d30
09 Nov, 2023 3 commits
- creating new program to isolate aligned sequences · f6409abf
  Theo Serralta authored Nov 09, 2023
  
  f6409abf
- Adding some modification (reference dict) · c5c6351d
  Theo Serralta authored Nov 09, 2023
  
  c5c6351d
- Created a program for unaligned sequences · fe83e33a
  Theo Serralta authored Nov 09, 2023
  
  fe83e33a
27 Oct, 2023 1 commit
- Modification of code and it works ! · c7b394b5
  Theo Serralta authored Oct 27, 2023
  
  c7b394b5
20 Oct, 2023 4 commits
- Correction of error (code still false) · 66b472e7
  Theo Serralta authored Oct 20, 2023
  
  66b472e7
- Adding some comments · 44070658
  Theo Serralta authored Oct 20, 2023
  
  44070658
- Creation of a test to read bam with gpu · 89f57db8
  Theo Serralta authored Oct 20, 2023
  
  89f57db8
- Adding final comments · 040df464
  Theo Serralta authored Oct 20, 2023
  
  040df464
19 Oct, 2023 1 commit
- Adding some comments · e98c0cf8
  Theo Serralta authored Oct 19, 2023
  
  e98c0cf8
13 Oct, 2023 4 commits
- update with example gpu · f5138a30
  Theo Serralta authored Oct 13, 2023
  
  f5138a30
- Adding test file · 097eb6a5
  Theo Serralta authored Oct 13, 2023
  
  097eb6a5
- deleting file · a9713966
  Theo Serralta authored Oct 13, 2023
  
  a9713966
- Adding a new file · 6027da6d
  Theo Serralta authored Oct 13, 2023
  
  6027da6d
29 Sep, 2023 3 commits
- Removing the test file · 6e48053c
  Yannis Duffourd authored Sep 29, 2023
  
  6e48053c
- Adding a new file for test · cd15db39
  Yannis Duffourd authored Sep 29, 2023
  
  cd15db39
- Add new file : readme & repo initialisation · 1c43d06d
  Yannis Duffourd authored Sep 29, 2023
  
  1c43d06d