Adding test file

script_fichier_BAM.py

+import pysam
+nb_seq=0
+samfile = pysam.AlignmentFile("/home/theo/Documents/alternance/Projet Alternance/dijex8000.bam", "rb")
+for read in samfile.fetch("chrY"):
+    print(read)
+    nb_seq+=1
+print(nb_seq)
+samfile.close()
+
+#for pileupcolumn in samfile.pileup("chr1", 1):
+#    print("\ncoverage at base %s = %s" % (pileupcolumn.pos, pileupcolumn.n))
+ #   for pileupread in pileupcolumn.pileups:
+  #      if not pileupread.is_del and not pileupread.is_refskip:
+            # query position is None if is_del or is_refskip is set.
+   #         print('\tbase in read %s = %s' %
+                 # (pileupread.alignment.query_name, #pileupread.alignment.query_sequence[pileupread.query_position]))
+
+#samfile.close()