Commits · adff611b3db30770341bf8803c525fb0ea1c44f4 · Anne-Sophie Denommé-Pichon / STR · GitLab

07 Jun, 2020 9 commits
- Fix some bugs · adff611b
  Anne-Sophie Denommé-Pichon authored Jun 08, 2020
  
  adff611b
- Make results pipeline more generic · 2b4c77e7
  Anne-Sophie Denommé-Pichon authored Jun 07, 2020
  
  2b4c77e7
- Make EHDN pipeline more generic · cc421cc2
  Anne-Sophie Denommé-Pichon authored Jun 07, 2020
  
  cc421cc2
- Remove unused scripts and replace triplets by str · ca848b6f
  Anne-Sophie Denommé-Pichon authored Jun 07, 2020
  
  ca848b6f
- Rename wrapper_ehdn.sh to wrapper_ehdn_profile.sh · b72da0c7
  Anne-Sophie Denommé-Pichon authored Jun 07, 2020
  
  b72da0c7
- Update TODO.org · 16f9d1ec
  Anne-Sophie Denommé-Pichon authored Jun 07, 2020
  
  16f9d1ec
- Create config.sh and TODO.org · f89dc48a
  Anne-Sophie Denommé-Pichon authored Jun 07, 2020
  
  f89dc48a
- Handle optional transfer from an archive directory · e8755663
  Anne-Sophie Denommé-Pichon authored Jun 07, 2020
  
  e8755663
- Add variables to make scripts more generic · fa20a9b3
  Anne-Sophie Denommé-Pichon authored Jun 07, 2020
  
  fa20a9b3
06 Jun, 2020 5 commits
- Remove scripts for HipSTR STRetch STRscan LobSTR · 6cccde09
  Anne-Sophie Denommé-Pichon authored Jun 07, 2020
  
  6cccde09
- Merge branch 'master' of gitlab.gad-bioinfo.org:Anne-Sophie/triplets · 9eeb4779
  Anne-Sophie Denommé-Pichon authored Jun 07, 2020
  
  9eeb4779
- Remove commands creating file.failed on error · 2d1b505d
  Anne-Sophie Denommé-Pichon authored Jun 07, 2020
  
  2d1b505d
- Update headers · 14be1720
  Anne-Sophie Denommé-Pichon authored Jun 06, 2020
  
  14be1720
- Change variable names · e4c144bc
  Anne-Sophie Denommé-Pichon authored Jun 06, 2020
  
  e4c144bc
16 Feb, 2020 7 commits
- Update README.md · 3cd89267
  Anne-Sophie Denommé-Pichon authored Feb 16, 2020
  
  3cd89267
- Update README.md · c4d1bd33
  Anne-Sophie Denommé-Pichon authored Feb 16, 2020
  
  c4d1bd33
- Move STR plot scripts with other scripts · 63e81b42
  Anne-Sophie Denommé-Pichon authored Feb 16, 2020
  
  63e81b42
- Update README · 64c31165
  Anne-Sophie Denommé-Pichon authored Feb 16, 2020
  
  64c31165
- Create script to launch ehdn outlier analysis on SGE · 4c33f449
  Anne-Sophie Denommé-Pichon authored Feb 16, 2020
  
  4c33f449
- Add sample name to SGE job · 3df41650
  Anne-Sophie Denommé-Pichon authored Feb 16, 2020
  
  3df41650
- Handle ehdn outlier analyses on SGE for all patients · c7b5da6e
  Anne-Sophie Denommé-Pichon authored Feb 16, 2020
  
  c7b5da6e
15 Feb, 2020 13 commits
- Fix Markdown · 35460f6a
  Anne-Sophie Denommé-Pichon authored Feb 15, 2020
  
  35460f6a
- Fix Markdown · de0b4120
  Anne-Sophie Denommé-Pichon authored Feb 15, 2020
  
  de0b4120
- Fix Markdown · 2740da81
  Anne-Sophie Denommé-Pichon authored Feb 15, 2020
  
  2740da81
- Update .gitignore · 274e0ce8
  Anne-Sophie Denommé-Pichon authored Feb 15, 2020
  
  274e0ce8
- Change job number · b0fb967d
  Anne-Sophie Denommé-Pichon authored Feb 15, 2020
  
  b0fb967d
- Change input file to be easily applied to dijen · cab9082c
  Anne-Sophie Denommé-Pichon authored Feb 15, 2020
  
  cab9082c
- Create script to launch EHDN outlier analyses on SGE · 65481d14
  Anne-Sophie Denommé-Pichon authored Feb 15, 2020
  
  65481d14
- Fix dependency information errors · b2269fee
  Anne-Sophie Denommé-Pichon authored Feb 15, 2020
  
  b2269fee
- Change ehdn outlier analysis script to handle qsub · b069b9cc
  Anne-Sophie Denommé-Pichon authored Feb 15, 2020
  
  b069b9cc
- Do EHDN outlier analyses (not parallelized) · 62eed830
  Anne-Sophie Denommé-Pichon authored Feb 15, 2020
  
  62eed830
- Add README · 3a695c04
  Anne-Sophie Denommé-Pichon authored Feb 15, 2020
  
  3a695c04
- Create script to check parallelization of launch_pipeline.sh · b27830b3
  Anne-Sophie Denommé-Pichon authored Feb 15, 2020
  
  b27830b3
- Add script to generate manifest by patient for EHDN · dc46dad7
  Anne-Sophie Denommé-Pichon authored Feb 15, 2020
  
  dc46dad7
09 Feb, 2020 3 commits
- Add a column for outliers < 3 · c9d1fe18
  Anne-Sophie Denommé-Pichon authored Feb 09, 2020
  
  c9d1fe18
- Keep only zscore >= 1.5 and dijen with outliers · b79a0466
  Anne-Sophie Denommé-Pichon authored Feb 09, 2020
  
  b79a0466
- Create script to identify outliers from STR results · 8ebd33d3
  Anne-Sophie Denommé-Pichon authored Feb 09, 2020
  
  8ebd33d3
03 Feb, 2020 2 commits
- Handle all tools from the input tsv files when plotting · 1e5b9d7d
  Anne-Sophie Denommé-Pichon authored Feb 03, 2020
  
  1e5b9d7d
- Create script to draw html graph to visualize STR results · d17f9a99
  Anne-Sophie Denommé-Pichon authored Feb 03, 2020
  
  d17f9a99
18 Dec, 2019 1 commit
- Add Tredparse and GangSTR to getResults.py · 4e810be0
  Anne-Sophie Denommé-Pichon authored Dec 18, 2019
  
  4e810be0