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version 0.3

Vihgo v0.3 Vihgo can now work on any virus sequencing data. You need to provide a reference genome (fasta format), and a gff file for genome features identification.

  • Cs generation
  • Codon table generation
  • Variation file generation
  • Annotation has been "removed", need a third party tool
  • GFF support for genome annotation (genes and prot)
  • Can now perform the wariant calling with or without control sample
  • Tested on VIH and SarsCov2, fully working
  • Insertions / deletions are not yet detected (dev branch)
  • Unit tests are in active implementation