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Created with Raphaël 2.2.029Jan228Dec24Sep29Jul1023Apr17Mar19Adding new method to compute the full genome consensus sequencemastermasterAdding new method to compute the full genome consensus sequenceAdding full cs sequence capabilitiesAdding new option to support full cs sequence writingadding new method to write the full consensus sequenceadding new method to write the full consensus sequenceMerge branch 'master' of gitlab.gad-bioinfo.org:gad-public/vihgo into masterChanging formatCode refactoringChanging help messagesCode reformating for clang complienceAdding control cs improvementAdding support for undetermined AA from codon containing NAdding support for I/O optimisation with -std=gnu++0x flag enable for old compilersImplementing new method to FET computing, not in used actuallyAdding support for deletion / insertion callingdeleting unversion filev0.3 develv0.3 develimplementing unit testsadding statistical tests (FET, CHI2), need a probable rewampin run control is now an optionrelease v0.3 : Adding features : read in run control optionnaly, cs generation, variant calling by codon, new codon file format, annotation are now deactivated, backgroupnd noise is computed on sample itself avoiding issues if there is no control, hard & soft clipping management, bug correction regarding missing data in controlsAdding targets for ccub, debug mode, unit testsrelease v0.3 : Adding features : read in run control optionnaly, cs generation, variant calling by codon, new codon file format, annotation are now deactivated, backgroupnd noise is computed on sample itself avoiding issues if there is no control, hard & soft clipping management, bug correction regarding missing data in controlsimplementation of reference, genes and annotations readingimplementation of reference, genes and annotations readingimplementation of reference, genes and annotations readingadding test dataAdding cpp versionBug correctionNew cpp folderTest of the commitStopFuncStopFuncInitial commit of the repository