Commit ed6f2864 authored by Yannis Duffourd's avatar Yannis Duffourd

Changing help messages

parent d066f640
......@@ -66,8 +66,8 @@ int main(int argc, char* argv[])
("gene,g" , po::value<string>( &geneFile ) , "Gene annotation file related to reference genome provided." )
("depth,d", po::value<int>( &depthThreshold )->default_value(50), "Depth treshold to call a variant. (optional)")
("ratio,a" , po::value<double>( &ratioThreshold )->default_value(0.1) , "Minimum ratio of alt reads to take in account a mutation. (optional)" )
("pvalue,p" , po::value<double>( &pvalueThreshold )->default_value(0.05) , "pvalue threshold from FET to take in account a mutation. (optional)" )
("ratio,a" , po::value<double>( &ratioThreshold )->default_value(0.1) , "Minimum ratio of alt reads to consider a mutation. (optional)" )
("pvalue,p" , po::value<double>( &pvalueThreshold )->default_value(0.05) , "pvalue threshold from FET to consider a mutation. (optional)" )
("stop,s" , "Activate stop codon detction." )
("thread,t", po::value<int>( &nbThread )->default_value(50), "Number of thread to use. (NYI)")
......
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