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Commit 82c20d8b authored by Yannis Duffourd's avatar Yannis Duffourd
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adding test data

parent b2c92990
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data/8E5.bam 0 → 100644
View file @ 82c20d8b
File added
data/8E5.bam.bai 0 → 100644
View file @ 82c20d8b
File added
data/K03455.1.clean.gff 0 → 100644
View file @ 82c20d8b
K03455.1 Genbank CDS 5041 5619 . + 0 ID=cds-AAB50260.1;Parent=rna-K03455.1:455..9635;Dbxref=NCBI_GP:AAB50260.1;Name=AAB50260.1;gbkey=CDS;product=AAB50260.1;protein_id=AAB50260.1
K03455.1 Genbank CDS 5559 5795 . + 0 ID=cds-AAB50261.1;Parent=rna-K03455.1:455..9635;Dbxref=NCBI_GP:AAB50261.1;Name=AAB50261.1;gbkey=CDS;product=AAB50261.1;protein_id=AAB50261.1
K03455.1 Genbank CDS 6225 8795 . + 0 ID=cds-AAB50262.1;Parent=rna-K03455.1:455..9635;Dbxref=NCBI_GP:AAB50262.1;Name=AAB50262.1;gbkey=CDS;product=AAB50262.1;protein_id=AAB50262.1
K03455.1 Genbank CDS 8797 9168 . + 0 ID=cds-AAB50263.1;Parent=rna-K03455.1:455..9635;Dbxref=NCBI_GP:AAB50263.1;Name=AAB50263.1;gbkey=CDS;product=AAB50263.1;protein_id=AAB50263.1
K03455.1 Genbank CDS 5831 6045 . + 0 ID=cds-AAB50256.1;Dbxref=NCBI_GP:AAB50256.1;Name=AAB50256.1;gbkey=CDS;product=AAB50256.1;protein_id=AAB50256.1
K03455.1 Genbank CDS 8379 8424 . + 1 ID=cds-AAB50256.1;Dbxref=NCBI_GP:AAB50256.1;Name=AAB50256.1;gbkey=CDS;product=AAB50256.1;protein_id=AAB50256.1
K03455.1 Genbank CDS 5970 6045 . + 0 ID=cds-AAB50257.1;Dbxref=NCBI_GP:AAB50257.1;Name=AAB50257.1;gbkey=CDS;product=AAB50257.1;protein_id=AAB50257.1
K03455.1 Genbank CDS 8379 8653 . + 2 ID=cds-AAB50257.1;Dbxref=NCBI_GP:AAB50257.1;Name=AAB50257.1;gbkey=CDS;product=AAB50257.1;protein_id=AAB50257.1
K03455.1 Genbank CDS 2253 2549 . + 2 ID=cds-AAB50259.1;Dbxref=NCBI_GP:AAB50259.1;Name=AAB50259.1;gbkey=CDS;product=AAB50259.1;protein_id=protease
K03455.1 Genbank CDS 2550 3869 . + 2 ID=cds-AAB50259.1;Dbxref=NCBI_GP:AAB50259.1;Name=AAB50259.1;gbkey=CDS;product=AAB50259.1;protein_id=reverse-transcriptase
K03455.1 Genbank CDS 4230 5093 . + 2 ID=cds-AAB50259.1;Dbxref=NCBI_GP:AAB50259.1;Name=AAB50259.1;gbkey=CDS;product=AAB50259.1;protein_id=integrase
data/K03455.1.fa 0 → 100644
View file @ 82c20d8b
>K03455.1
TGGAAGGGCTAATTCACTCCCAACGAAGACAAGATATCCTTGATCTGTGGATCTACCACACACAAGGCTA
CTTCCCTGATTAGCAGAACTACACACCAGGGCCAGGGATCAGATATCCACTGACCTTTGGATGGTGCTAC
AAGCTAGTACCAGTTGAGCCAGAGAAGTTAGAAGAAGCCAACAAAGGAGAGAACACCAGCTTGTTACACC
CTGTGAGCCTGCATGGAATGGATGACCCGGAGAGAGAAGTGTTAGAGTGGAGGTTTGACAGCCGCCTAGC
ATTTCATCACATGGCCCGAGAGCTGCATCCGGAGTACTTCAAGAACTGCTGACATCGAGCTTGCTACAAG
GGACTTTCCGCTGGGGACTTTCCAGGGAGGCGTGGCCTGGGCGGGACTGGGGAGTGGCGAGCCCTCAGAT
CCTGCATATAAGCAGCTGCTTTTTGCCTGTACTGGGTCTCTCTGGTTAGACCAGATCTGAGCCTGGGAGC
TCTCTGGCTAACTAGGGAACCCACTGCTTAAGCCTCAATAAAGCTTGCCTTGAGTGCTTCAAGTAGTGTG
TGCCCGTCTGTTGTGTGACTCTGGTAACTAGAGATCCCTCAGACCCTTTTAGTCAGTGTGGAAAATCTCT
AGCAGTGGCGCCCGAACAGGGACCTGAAAGCGAAAGGGAAACCAGAGGAGCTCTCTCGACGCAGGACTCG
GCTTGCTGAAGCGCGCACGGCAAGAGGCGAGGGGCGGCGACTGGTGAGTACGCCAAAAATTTTGACTAGC
GGAGGCTAGAAGGAGAGAGATGGGTGCGAGAGCGTCAGTATTAAGCGGGGGAGAATTAGATCGATGGGAA
AAAATTCGGTTAAGGCCAGGGGGAAAGAAAAAATATAAATTAAAACATATAGTATGGGCAAGCAGGGAGC
TAGAACGATTCGCAGTTAATCCTGGCCTGTTAGAAACATCAGAAGGCTGTAGACAAATACTGGGACAGCT
ACAACCATCCCTTCAGACAGGATCAGAAGAACTTAGATCATTATATAATACAGTAGCAACCCTCTATTGT
GTGCATCAAAGGATAGAGATAAAAGACACCAAGGAAGCTTTAGACAAGATAGAGGAAGAGCAAAACAAAA
GTAAGAAAAAAGCACAGCAAGCAGCAGCTGACACAGGACACAGCAATCAGGTCAGCCAAAATTACCCTAT
AGTGCAGAACATCCAGGGGCAAATGGTACATCAGGCCATATCACCTAGAACTTTAAATGCATGGGTAAAA
GTAGTAGAAGAGAAGGCTTTCAGCCCAGAAGTGATACCCATGTTTTCAGCATTATCAGAAGGAGCCACCC
CACAAGATTTAAACACCATGCTAAACACAGTGGGGGGACATCAAGCAGCCATGCAAATGTTAAAAGAGAC
CATCAATGAGGAAGCTGCAGAATGGGATAGAGTGCATCCAGTGCATGCAGGGCCTATTGCACCAGGCCAG
ATGAGAGAACCAAGGGGAAGTGACATAGCAGGAACTACTAGTACCCTTCAGGAACAAATAGGATGGATGA
CAAATAATCCACCTATCCCAGTAGGAGAAATTTATAAAAGATGGATAATCCTGGGATTAAATAAAATAGT
AAGAATGTATAGCCCTACCAGCATTCTGGACATAAGACAAGGACCAAAGGAACCCTTTAGAGACTATGTA
GACCGGTTCTATAAAACTCTAAGAGCCGAGCAAGCTTCACAGGAGGTAAAAAATTGGATGACAGAAACCT
TGTTGGTCCAAAATGCGAACCCAGATTGTAAGACTATTTTAAAAGCATTGGGACCAGCGGCTACACTAGA
AGAAATGATGACAGCATGTCAGGGAGTAGGAGGACCCGGCCATAAGGCAAGAGTTTTGGCTGAAGCAATG
AGCCAAGTAACAAATTCAGCTACCATAATGATGCAGAGAGGCAATTTTAGGAACCAAAGAAAGATTGTTA
AGTGTTTCAATTGTGGCAAAGAAGGGCACACAGCCAGAAATTGCAGGGCCCCTAGGAAAAAGGGCTGTTG
GAAATGTGGAAAGGAAGGACACCAAATGAAAGATTGTACTGAGAGACAGGCTAATTTTTTAGGGAAGATC
TGGCCTTCCTACAAGGGAAGGCCAGGGAATTTTCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGAAG
AGAGCTTCAGGTCTGGGGTAGAGACAACAACTCCCCCTCAGAAGCAGGAGCCGATAGACAAGGAACTGTA
TCCTTTAACTTCCCTCAGGTCACTCTTTGGCAACGACCCCTCGTCACAATAAAGATAGGGGGGCAACTAA
AGGAAGCTCTATTAGATACAGGAGCAGATGATACAGTATTAGAAGAAATGAGTTTGCCAGGAAGATGGAA
ACCAAAAATGATAGGGGGAATTGGAGGTTTTATCAAAGTAAGACAGTATGATCAGATACTCATAGAAATC
TGTGGACATAAAGCTATAGGTACAGTATTAGTAGGACCTACACCTGTCAACATAATTGGAAGAAATCTGT
TGACTCAGATTGGTTGCACTTTAAATTTTCCCATTAGCCCTATTGAGACTGTACCAGTAAAATTAAAGCC
AGGAATGGATGGCCCAAAAGTTAAACAATGGCCATTGACAGAAGAAAAAATAAAAGCATTAGTAGAAATT
TGTACAGAGATGGAAAAGGAAGGGAAAATTTCAAAAATTGGGCCTGAAAATCCATACAATACTCCAGTAT
TTGCCATAAAGAAAAAAGACAGTACTAAATGGAGAAAATTAGTAGATTTCAGAGAACTTAATAAGAGAAC
TCAAGACTTCTGGGAAGTTCAATTAGGAATACCACATCCCGCAGGGTTAAAAAAGAAAAAATCAGTAACA
GTACTGGATGTGGGTGATGCATATTTTTCAGTTCCCTTAGATGAAGACTTCAGGAAGTATACTGCATTTA
CCATACCTAGTATAAACAATGAGACACCAGGGATTAGATATCAGTACAATGTGCTTCCACAGGGATGGAA
AGGATCACCAGCAATATTCCAAAGTAGCATGACAAAAATCTTAGAGCCTTTTAGAAAACAAAATCCAGAC
ATAGTTATCTATCAATACATGGATGATTTGTATGTAGGATCTGACTTAGAAATAGGGCAGCATAGAACAA
AAATAGAGGAGCTGAGACAACATCTGTTGAGGTGGGGACTTACCACACCAGACAAAAAACATCAGAAAGA
ACCTCCATTCCTTTGGATGGGTTATGAACTCCATCCTGATAAATGGACAGTACAGCCTATAGTGCTGCCA
GAAAAAGACAGCTGGACTGTCAATGACATACAGAAGTTAGTGGGGAAATTGAATTGGGCAAGTCAGATTT
ACCCAGGGATTAAAGTAAGGCAATTATGTAAACTCCTTAGAGGAACCAAAGCACTAACAGAAGTAATACC
ACTAACAGAAGAAGCAGAGCTAGAACTGGCAGAAAACAGAGAGATTCTAAAAGAACCAGTACATGGAGTG
TATTATGACCCATCAAAAGACTTAATAGCAGAAATACAGAAGCAGGGGCAAGGCCAATGGACATATCAAA
TTTATCAAGAGCCATTTAAAAATCTGAAAACAGGAAAATATGCAAGAATGAGGGGTGCCCACACTAATGA
TGTAAAACAATTAACAGAGGCAGTGCAAAAAATAACCACAGAAAGCATAGTAATATGGGGAAAGACTCCT
AAATTTAAACTGCCCATACAAAAGGAAACATGGGAAACATGGTGGACAGAGTATTGGCAAGCCACCTGGA
TTCCTGAGTGGGAGTTTGTTAATACCCCTCCCTTAGTGAAATTATGGTACCAGTTAGAGAAAGAACCCAT
AGTAGGAGCAGAAACCTTCTATGTAGATGGGGCAGCTAACAGGGAGACTAAATTAGGAAAAGCAGGATAT
GTTACTAATAGAGGAAGACAAAAAGTTGTCACCCTAACTGACACAACAAATCAGAAGACTGAGTTACAAG
CAATTTATCTAGCTTTGCAGGATTCGGGATTAGAAGTAAACATAGTAACAGACTCACAATATGCATTAGG
AATCATTCAAGCACAACCAGATCAAAGTGAATCAGAGTTAGTCAATCAAATAATAGAGCAGTTAATAAAA
AAGGAAAAGGTCTATCTGGCATGGGTACCAGCACACAAAGGAATTGGAGGAAATGAACAAGTAGATAAAT
TAGTCAGTGCTGGAATCAGGAAAGTACTATTTTTAGATGGAATAGATAAGGCCCAAGATGAACATGAGAA
ATATCACAGTAATTGGAGAGCAATGGCTAGTGATTTTAACCTGCCACCTGTAGTAGCAAAAGAAATAGTA
GCCAGCTGTGATAAATGTCAGCTAAAAGGAGAAGCCATGCATGGACAAGTAGACTGTAGTCCAGGAATAT
GGCAACTAGATTGTACACATTTAGAAGGAAAAGTTATCCTGGTAGCAGTTCATGTAGCCAGTGGATATAT
AGAAGCAGAAGTTATTCCAGCAGAAACAGGGCAGGAAACAGCATATTTTCTTTTAAAATTAGCAGGAAGA
TGGCCAGTAAAAACAATACATACTGACAATGGCAGCAATTTCACCGGTGCTACGGTTAGGGCCGCCTGTT
GGTGGGCGGGAATCAAGCAGGAATTTGGAATTCCCTACAATCCCCAAAGTCAAGGAGTAGTAGAATCTAT
GAATAAAGAATTAAAGAAAATTATAGGACAGGTAAGAGATCAGGCTGAACATCTTAAGACAGCAGTACAA
ATGGCAGTATTCATCCACAATTTTAAAAGAAAAGGGGGGATTGGGGGGTACAGTGCAGGGGAAAGAATAG
TAGACATAATAGCAACAGACATACAAACTAAAGAATTACAAAAACAAATTACAAAAATTCAAAATTTTCG
GGTTTATTACAGGGACAGCAGAAATCCACTTTGGAAAGGACCAGCAAAGCTCCTCTGGAAAGGTGAAGGG
GCAGTAGTAATACAAGATAATAGTGACATAAAAGTAGTGCCAAGAAGAAAAGCAAAGATCATTAGGGATT
ATGGAAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAGAACATGGAAAAGTT
TAGTAAAACACCATATGTATGTTTCAGGGAAAGCTAGGGGATGGTTTTATAGACATCACTATGAAAGCCC
TCATCCAAGAATAAGTTCAGAAGTACACATCCCACTAGGGGATGCTAGATTGGTAATAACAACATATTGG
GGTCTGCATACAGGAGAAAGAGACTGGCATTTGGGTCAGGGAGTCTCCATAGAATGGAGGAAAAAGAGAT
ATAGCACACAAGTAGACCCTGAACTAGCAGACCAACTAATTCATCTGTATTACTTTGACTGTTTTTCAGA
CTCTGCTATAAGAAAGGCCTTATTAGGACACATAGTTAGCCCTAGGTGTGAATATCAAGCAGGACATAAC
AAGGTAGGATCTCTACAATACTTGGCACTAGCAGCATTAATAACACCAAAAAAGATAAAGCCACCTTTGC
CTAGTGTTACGAAACTGACAGAGGATAGATGGAACAAGCCCCAGAAGACCAAGGGCCACAGAGGGAGCCA
CACAATGAATGGACACTAGAGCTTTTAGAGGAGCTTAAGAATGAAGCTGTTAGACATTTTCCTAGGATTT
GGCTCCATGGCTTAGGGCAACATATCTATGAAACTTATGGGGATACTTGGGCAGGAGTGGAAGCCATAAT
AAGAATTCTGCAACAACTGCTGTTTATCCATTTTCAGAATTGGGTGTCGACATAGCAGAATAGGCGTTAC
TCGACAGAGGAGAGCAAGAAATGGAGCCAGTAGATCCTAGACTAGAGCCCTGGAAGCATCCAGGAAGTCA
GCCTAAAACTGCTTGTACCAATTGCTATTGTAAAAAGTGTTGCTTTCATTGCCAAGTTTGTTTCATAACA
AAAGCCTTAGGCATCTCCTATGGCAGGAAGAAGCGGAGACAGCGACGAAGAGCTCATCAGAACAGTCAGA
CTCATCAAGCTTCTCTATCAAAGCAGTAAGTAGTACATGTAACGCAACCTATACCAATAGTAGCAATAGT
AGCATTAGTAGTAGCAATAATAATAGCAATAGTTGTGTGGTCCATAGTAATCATAGAATATAGGAAAATA
TTAAGACAAAGAAAAATAGACAGGTTAATTGATAGACTAATAGAAAGAGCAGAAGACAGTGGCAATGAGA
GTGAAGGAGAAATATCAGCACTTGTGGAGATGGGGGTGGAGATGGGGCACCATGCTCCTTGGGATGTTGA
TGATCTGTAGTGCTACAGAAAAATTGTGGGTCACAGTCTATTATGGGGTACCTGTGTGGAAGGAAGCAAC
CACCACTCTATTTTGTGCATCAGATGCTAAAGCATATGATACAGAGGTACATAATGTTTGGGCCACACAT
GCCTGTGTACCCACAGACCCCAACCCACAAGAAGTAGTATTGGTAAATGTGACAGAAAATTTTAACATGT
GGAAAAATGACATGGTAGAACAGATGCATGAGGATATAATCAGTTTATGGGATCAAAGCCTAAAGCCATG
TGTAAAATTAACCCCACTCTGTGTTAGTTTAAAGTGCACTGATTTGAAGAATGATACTAATACCAATAGT
AGTAGCGGGAGAATGATAATGGAGAAAGGAGAGATAAAAAACTGCTCTTTCAATATCAGCACAAGCATAA
GAGGTAAGGTGCAGAAAGAATATGCATTTTTTTATAAACTTGATATAATACCAATAGATAATGATACTAC
CAGCTATAAGTTGACAAGTTGTAACACCTCAGTCATTACACAGGCCTGTCCAAAGGTATCCTTTGAGCCA
ATTCCCATACATTATTGTGCCCCGGCTGGTTTTGCGATTCTAAAATGTAATAATAAGACGTTCAATGGAA
CAGGACCATGTACAAATGTCAGCACAGTACAATGTACACATGGAATTAGGCCAGTAGTATCAACTCAACT
GCTGTTAAATGGCAGTCTAGCAGAAGAAGAGGTAGTAATTAGATCTGTCAATTTCACGGACAATGCTAAA
ACCATAATAGTACAGCTGAACACATCTGTAGAAATTAATTGTACAAGACCCAACAACAATACAAGAAAAA
GAATCCGTATCCAGAGAGGACCAGGGAGAGCATTTGTTACAATAGGAAAAATAGGAAATATGAGACAAGC
ACATTGTAACATTAGTAGAGCAAAATGGAATAACACTTTAAAACAGATAGCTAGCAAATTAAGAGAACAA
TTTGGAAATAATAAAACAATAATCTTTAAGCAATCCTCAGGAGGGGACCCAGAAATTGTAACGCACAGTT
TTAATTGTGGAGGGGAATTTTTCTACTGTAATTCAACACAACTGTTTAATAGTACTTGGTTTAATAGTAC
TTGGAGTACTGAAGGGTCAAATAACACTGAAGGAAGTGACACAATCACCCTCCCATGCAGAATAAAACAA
ATTATAAACATGTGGCAGAAAGTAGGAAAAGCAATGTATGCCCCTCCCATCAGTGGACAAATTAGATGTT
CATCAAATATTACAGGGCTGCTATTAACAAGAGATGGTGGTAATAGCAACAATGAGTCCGAGATCTTCAG
ACCTGGAGGAGGAGATATGAGGGACAATTGGAGAAGTGAATTATATAAATATAAAGTAGTAAAAATTGAA
CCATTAGGAGTAGCACCCACCAAGGCAAAGAGAAGAGTGGTGCAGAGAGAAAAAAGAGCAGTGGGAATAG
GAGCTTTGTTCCTTGGGTTCTTGGGAGCAGCAGGAAGCACTATGGGCGCAGCCTCAATGACGCTGACGGT
ACAGGCCAGACAATTATTGTCTGGTATAGTGCAGCAGCAGAACAATTTGCTGAGGGCTATTGAGGCGCAA
CAGCATCTGTTGCAACTCACAGTCTGGGGCATCAAGCAGCTCCAGGCAAGAATCCTGGCTGTGGAAAGAT
ACCTAAAGGATCAACAGCTCCTGGGGATTTGGGGTTGCTCTGGAAAACTCATTTGCACCACTGCTGTGCC
TTGGAATGCTAGTTGGAGTAATAAATCTCTGGAACAGATTTGGAATCACACGACCTGGATGGAGTGGGAC
AGAGAAATTAACAATTACACAAGCTTAATACACTCCTTAATTGAAGAATCGCAAAACCAGCAAGAAAAGA
ATGAACAAGAATTATTGGAATTAGATAAATGGGCAAGTTTGTGGAATTGGTTTAACATAACAAATTGGCT
GTGGTATATAAAATTATTCATAATGATAGTAGGAGGCTTGGTAGGTTTAAGAATAGTTTTTGCTGTACTT
TCTATAGTGAATAGAGTTAGGCAGGGATATTCACCATTATCGTTTCAGACCCACCTCCCAACCCCGAGGG
GACCCGACAGGCCCGAAGGAATAGAAGAAGAAGGTGGAGAGAGAGACAGAGACAGATCCATTCGATTAGT
GAACGGATCCTTGGCACTTATCTGGGACGATCTGCGGAGCCTGTGCCTCTTCAGCTACCACCGCTTGAGA
GACTTACTCTTGATTGTAACGAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAAGCCCTCAAATATT
GGTGGAATCTCCTACAGTATTGGAGTCAGGAACTAAAGAATAGTGCTGTTAGCTTGCTCAATGCCACAGC
CATAGCAGTAGCTGAGGGGACAGATAGGGTTATAGAAGTAGTACAAGGAGCTTGTAGAGCTATTCGCCAC
ATACCTAGAAGAATAAGACAGGGCTTGGAAAGGATTTTGCTATAAGATGGGTGGCAAGTGGTCAAAAAGT
AGTGTGATTGGATGGCCTACTGTAAGGGAAAGAATGAGACGAGCTGAGCCAGCAGCAGATAGGGTGGGAG
CAGCATCTCGAGACCTGGAAAAACATGGAGCAATCACAAGTAGCAATACAGCAGCTACCAATGCTGCTTG
TGCCTGGCTAGAAGCACAAGAGGAGGAGGAGGTGGGTTTTCCAGTCACACCTCAGGTACCTTTAAGACCA
ATGACTTACAAGGCAGCTGTAGATCTTAGCCACTTTTTAAAAGAAAAGGGGGGACTGGAAGGGCTAATTC
ACTCCCAAAGAAGACAAGATATCCTTGATCTGTGGATCTACCACACACAAGGCTACTTCCCTGATTAGCA
GAACTACACACCAGGGCCAGGGGTCAGATATCCACTGACCTTTGGATGGTGCTACAAGCTAGTACCAGTT
GAGCCAGATAAGATAGAAGAGGCCAATAAAGGAGAGAACACCAGCTTGTTACACCCTGTGAGCCTGCATG
GGATGGATGACCCGGAGAGAGAAGTGTTAGAGTGGAGGTTTGACAGCCGCCTAGCATTTCATCACGTGGC
CCGAGAGCTGCATCCGGAGTACTTCAAGAACTGCTGACATCGAGCTTGCTACAAGGGACTTTCCGCTGGG
GACTTTCCAGGGAGGCGTGGCCTGGGCGGGACTGGGGAGTGGCGAGCCCTCAGATCCTGCATATAAGCAG
CTGCTTTTTGCCTGTACTGGGTCTCTCTGGTTAGACCAGATCTGAGCCTGGGAGCTCTCTGGCTAACTAG
GGAACCCACTGCTTAAGCCTCAATAAAGCTTGCCTTGAGTGCTTCAAGTAGTGTGTGCCCGTCTGTTGTG
TGACTCTGGTAACTAGAGATCCCTCAGACCCTTTTAGTCAGTGTGGAAAATCTCTAGCA
data/integrase.tsv.csv 0 → 100644
View file @ 82c20d8b
#Integrase
Position Position AA Nucléotides CONCLUSION
AA nucléotides SAUVAGE AA FINAL
49 145 A GCT A
49 145 A GCC A WT
49 145 A GCA A
49 145 A GCG A
49 145 A GGT G MUTE
49 145 A GGC G MUTE
49 145 A GGG G MUTE
49 145 A GGA G MUTE
66 196 T ACT T
66 196 T ACC T
66 196 T ACA T WT
66 196 T ACG T
66 196 T AAA K MUTE
66 196 T AAG K MUTE
66 196 T ATT I MUTE
66 196 T ATC I MUTE
66 196 T ATA I MUTE
66 196 T GCT A MUTE
66 196 T GCC A MUTE
66 196 T GCA A MUTE
66 196 T GCG A MUTE
74 220 L TTG L
74 220 L TTA L
74 220 L CTT L
74 220 L CTC L
74 220 L CTG L WT
74 220 L CTA L
74 220 L ATT I MUTE
74 220 L ATC I MUTE
74 220 L ATA I MUTE
74 220 L ATG M MUTE
92 274 E GAA E WT
92 274 E GAG E
92 274 E CAA Q MUTE
92 274 E CAG Q MUTE
92 274 E GGA G MUTE
92 274 E GGG G MUTE
92 274 E GGT G MUTE
92 274 E GGC G MUTE
97 289 T ACT T
97 289 T ACA T WT
97 289 T ACG T
97 289 T ACC T
97 289 T GCA A MUTE
97 289 T GCT A MUTE
97 289 T GCG A MUTE
97 289 T GCC A MUTE
118 352 G GGT G
118 352 G GGC G WT
118 352 G GGA G
118 352 G GGG G
118 352 G CGT R MUTE
118 352 G CGC R MUTE
118 352 G CGA R MUTE
118 352 G CGG R MUTE
118 352 G AGA R MUTE
118 352 G AGG R MUTE
121 361 F TTT F
121 361 F TTC F WT
121 361 F TAT Y MUTE
121 361 F TAC Y MUTE
138 412 E GAA E WT
138 412 E GAG E
138 412 E AAA K MUTE
138 412 E AAG K MUTE
138 412 E GCT A MUTE
138 412 E GCC A MUTE
138 412 E GCA A MUTE
138 412 E GCG A MUTE
138 412 E ACT T MUTE
138 412 E ACC T MUTE
138 412 E ACA T MUTE
138 412 E ACG T MUTE
140 418 G GGT G
140 418 G GGC G
140 418 G GGA G WT
140 418 G GGG G
140 418 G GCT A MUTE
140 418 G GCC A MUTE
140 418 G GCA A MUTE
140 418 G GCG A MUTE
140 418 G TGT C MUTE
140 418 G TGC C MUTE
140 418 G TCT S MUTE
140 418 G TCC S MUTE
140 418 G TCA S MUTE
140 418 G TCG S MUTE
140 418 G AGT S MUTE
140 418 G AGC S MUTE
143 427 Y TAT Y
143 427 Y TAC Y WT
143 427 Y GCT A MUTE
143 427 Y GCC A MUTE
143 427 Y GCA A MUTE
143 427 Y GCG A MUTE
143 427 Y TGT C MUTE
143 427 Y TGC C MUTE
143 427 Y TCT S MUTE
143 427 Y TCC S MUTE
143 427 Y TCA S MUTE
143 427 Y TCG S MUTE
143 427 Y AGT S MUTE
143 427 Y AGC S MUTE
143 427 Y GGT G MUTE
143 427 Y GGC G MUTE
143 427 Y GGA G MUTE
143 427 Y GGG G MUTE
143 427 Y CAT H MUTE
143 427 Y CAC H MUTE
143 427 Y CGT R MUTE
143 427 Y CGC R MUTE
143 427 Y CGA R MUTE
143 427 Y CGG R MUTE
143 427 Y AGA R MUTE
143 427 Y AGG R MUTE
145 433 P CCT P
145 433 P CCC P WT
145 433 P CCA P
145 433 P CCG P
145 433 P TCC S MUTE
145 433 P TCA S MUTE
145 433 P TCG S MUTE
145 433 P AGT S MUTE
145 433 P AGC S MUTE
145 433 P TCT S MUTE
147 439 S TCT S
147 439 S TCC S
147 439 S TCA S
147 439 S TCG S
147 439 S AGT S WT
147 439 S AGC S
147 439 S GGT G MUTE
147 439 S GGC G MUTE
147 439 S GGA G MUTE
147 439 S GGG G MUTE
148 442 Q CAA Q WT
148 442 Q CAG Q WT
148 442 Q GAA E MUTE
148 442 Q GAG E MUTE
148 442 Q GGT G MUTE
148 442 Q GGT G MUTE
148 442 Q GGC G MUTE
148 442 Q GGA G MUTE
148 442 Q GGG G MUTE
148 442 Q CAC H MUTE
148 442 Q CAT H MUTE
148 442 Q AAA K MUTE
148 442 Q AAG K MUTE
148 442 Q CGA R MUTE
148 442 Q CGG R MUTE
148 442 Q AGA R MUTE
148 442 Q AGG R MUTE
151 451 V GTT V
151 451 V GTC V
151 451 V GTA V WT
151 451 V GTG V
151 451 V TTG L MUTE
151 451 V TTA L MUTE
151 451 V CTT L MUTE
151 451 V CTC L MUTE
151 451 V CTG L MUTE
151 451 V CTA L MUTE
153 457 S TCT S WT
153 457 S TCC S
153 457 S TCA S
153 457 S TCG S
153 457 S AGT S
153 457 S AGC S
153 457 S TTT F MUTE
153 457 S TTC F MUTE
153 457 S TAT Y MUTE
153 457 S TAC Y MUTE
155 463 N AAT N WT
155 463 N AAC N
155 463 N CAT H MUTE
155 463 N CAC H MUTE
155 463 N TCC S MUTE
155 463 N TCA S MUTE
155 463 N TCG S MUTE
155 463 N AGT S MUTE
155 463 N AGC S MUTE
155 463 N TCT S MUTE
155 463 N ACT T MUTE
155 463 N ACC T MUTE
155 463 N ACA T MUTE
155 463 N ACG T MUTE
157 469 E GAA E WT
157 469 E GAG E
157 469 E CAA Q MUTE
157 469 E CAG Q MUTE
230 688 S TCT S
230 688 S TCC S
230 688 S TCA S
230 688 S TCG S
230 688 S AGT S
230 688 S AGC S WT
230 688 S GGT G MUTE
230 688 S GGC G MUTE
230 688 S GGA G MUTE
230 688 S GGG G MUTE
230 688 S CGA R MUTE
230 688 S CGG R MUTE
230 688 S AGA R MUTE
230 688 S AGG R MUTE
263 787 R AGG R
263 787 R AGA R WT
263 787 R AAA K MUTE
263 787 R AAG K MUTE
data/protease.tsv.csv 0 → 100644
View file @ 82c20d8b
#Protease
Position Position AA Nucléotides CONCLUSION
AA nucléotides SAUVAGE AA FINAL
10 28 L TTG L
10 28 L TTA L
10 28 L CTT L
10 28 L CTC L WT
10 28 L CTG L
10 28 L TTT F MUTE
10 28 L TTC F MUTE
10 28 L ATT I MUTE
10 28 L ATC I MUTE
10 28 L ATA I MUTE
10 28 L ATG M MUTE
10 28 L CGT R MUTE
10 28 L CGC R MUTE
10 28 L CGA R MUTE
10 28 L CGG R MUTE
10 28 L AGA R MUTE
10 28 L AGG R MUTE
10 28 L TGT C MUTE
10 28 L TGC C MUTE
10 28 L GTT V MUTE
10 28 L GTC V MUTE
10 28 L GTA V MUTE
10 28 L GTG V MUTE
11 31 V GTT V
11 31 V GTC V WT
11 31 V GTA V
11 31 V GTG V
11 31 V ATT I MUTE
11 31 V ATC I MUTE
11 31 V ATA I MUTE
15 43 I ATT I
15 43 I ATC I
15 43 I ATA I WT
15 43 I GCT A MUTE
15 43 I GCC A MUTE
15 43 I GCA A MUTE
15 43 I GCG A MUTE
15 43 I GTT V MUTE
15 43 I GTC V MUTE
15 43 I GTA V MUTE
15 43 I GTG V MUTE
16 46 G GGT G
16 46 G GGC G
16 46 G GGA G
16 46 G GGG G WT
16 46 G GAA E MUTE
16 46 G GAG E MUTE
20 58 K AAA K
20 58 K AAG K WT
20 58 K ATT I MUTE
20 58 K ATC I MUTE
20 58 K ATA I MUTE
20 58 M ATG M MUTE
20 58 R CGT R MUTE
20 58 R CGC R MUTE
20 58 R CGA R MUTE
20 58 R AGA R MUTE
20 58 R AGG R MUTE
20 58 R GTA V MUTE
20 58 R GTT V MUTE
20 58 R GTG V MUTE
20 58 R GTC V MUTE
20 58 T ACT T MUTE
20 58 T ACC T MUTE
20 58 T ACA T MUTE
20 58 T ACG T MUTE
24 70 L TTG L
24 70 L TTA L WT
24 70 L CTT L
24 70 L CTC L
24 70 L CTA L
24 70 L CTG L
24 70 L ATT I MUTE
24 70 L ATC I MUTE
24 70 L ATA I MUTE
30 88 D GAT D WT
30 88 D GAC D
30 88 D AAT N MUTE
30 88 D AAC N MUTE
32 94 V GTT V
32 94 V GTC V
32 94 V GTA V WT
32 94 V GTG V
32 94 V ATT I MUTE
32 94 V ATC I MUTE
32 94 V ATA I MUTE
33 97 L TTG L
33 97 L TTA L WT
33 97 L CTT L
33 97 L CTC L
33 97 L CTA L
33 97 L CTG L
33 97 L TTT F MUTE
33 97 L TTC F MUTE
33 97 L ATT I MUTE
33 97 L ATC I MUTE
33 97 L ATA I MUTE
33 97 L GTT V MUTE
33 97 L GTC V MUTE
33 97 L GTA V MUTE
33 97 L GTG V MUTE
36 106 M ATG M WT
36 106 M ATT I MUTE
36 106 M ATC I MUTE
36 106 M ATA I MUTE
36 106 M TTG L MUTE
36 106 M TTA L MUTE
36 106 M CTT L MUTE
36 106 M CTC L MUTE
36 106 M CTA L MUTE
36 106 M CTG L MUTE
36 106 M GTT V MUTE
36 106 M GTC V MUTE
36 106 M GTA V MUTE
36 106 M GTG V MUTE
43 127 K AAA K WT
43 127 K AAG K
43 127 K ACT T MUTE
43 127 K ACC T MUTE
43 127 K ACA T MUTE
43 127 K ACG T MUTE
46 136 M ATG M WT
46 136 M ATT I MUTE
46 136 M ATC I MUTE
46 136 M ATA I MUTE
46 136 M TTG L MUTE
46 136 M TTA L MUTE
46 136 M CTT L MUTE
46 136 M CTC L MUTE
46 136 M CTA L MUTE
46 136 M CTG L MUTE
47 139 I ATT I
47 139 I ATC I
47 139 I ATA I WT
47 139 I GCT A MUTE
47 139 I GCC A MUTE
47 139 I GCA A MUTE
47 139 I GCG A MUTE
47 139 I GTT V MUTE
47 139 I GTC V MUTE
47 139 I GTA V MUTE
47 139 I GTG V MUTE
48 142 G GGT G
48 142 G GGC G
48 142 G GGA G
48 142 G GGG G WT
48 142 G GTT V MUTE
48 142 G GTC V MUTE
48 142 G GTA V MUTE
48 142 G GTG V MUTE
50 148 I ATT I WT
50 148 I ATC I
50 148 I ATA I
50 148 I GTT V MUTE
50 148 I GTC V MUTE
50 148 I GTA V MUTE
50 148 I GTG V MUTE
50 148 I TTG L MUTE
50 148 I TTA L MUTE
50 148 I CTT L MUTE
50 148 I CTC L MUTE
50 148 I CTG L MUTE
53 157 F TTT F WT
53 157 F TTC F
53 157 F TTG L MUTE
53 157 F TTA L MUTE
53 157 F CTT L MUTE
53 157 F CTC L MUTE
53 157 F CTA L MUTE
53 157 F CTG L MUTE
53 157 F TGG W MUTE
53 157 F TAT Y MUTE
53 157 F TAC Y MUTE
54 160 I ATT I
54 160 I ATC I WT
54 160 I ATA I
54 160 I GCT A MUTE
54 160 I GCC A MUTE
54 160 I GCA A MUTE
54 160 I GCG A MUTE
54 160 I ATG M MUTE
54 160 I TTG L MUTE
54 160 I TTA L MUTE
54 160 I CTT L MUTE
54 160 I CTC L MUTE
54 160 I CTA L MUTE
54 160 I CTG L MUTE
54 160 I TCT S MUTE
54 160 I TCC S MUTE
54 160 I TCA S MUTE
54 160 I TCG S MUTE
54 160 I AGT S MUTE
54 160 I AGC S MUTE
54 160 I ACT T MUTE
54 160 I ACC T MUTE
54 160 I ACA T MUTE
54 160 I ACG T MUTE
54 160 I GTT V MUTE
54 160 I GTC V MUTE
54 160 I GTA V MUTE
54 160 I GTG V MUTE
58 172 Q CAA Q
58 172 Q CAG Q WT
58 172 G GAA E MUTE
58 172 G GAG E MUTE
60 178 D GAT D WT
60 178 D GAC D
60 178 D GAA E MUTE
60 178 D GAG E MUTE
62 184 I ATT I
62 184 I ATC I
62 184 I ATA I WT
62 184 I GTT V MUTE
62 184 I GTC V MUTE
62 184 I GTA V MUTE
62 184 I GTG V MUTE
63 187 L TTG L
63 187 L TTA L
63 187 L CTT L
63 187 L CTC L WT
63 187 L CTA L
63 187 L CTG L
63 187 L CCT P MUTE
63 187 L CCC P MUTE
63 187 L CCA P MUTE
63 187 L CCG P MUTE
64 190 I ATA I WT
64 190 I ATC I
64 190 I ATT I
64 190 I ATG M MUTE
64 190 I GTA V MUTE
64 190 I GTG V MUTE
64 190 I GTC V MUTE
64 190 I GTT V MUTE
64 190 I CTA L MUTE
64 190 I CTG L MUTE
64 190 I CTT L MUTE
64 190 I CTC L MUTE
64 190 I TTA L MUTE
64 190 I TTG L MUTE
69 205 H CAT H WT
69 205 H CAC H
69 205 H ATT I MUTE
69 205 H ATC I MUTE
69 205 H ATA I MUTE
69 205 H AAA K MUTE
69 205 H AAG K MUTE
69 205 H AAT N MUTE
69 205 H AAC N MUTE
69 205 H CAA Q MUTE
69 205 H CAG Q MUTE
69 205 H CGT R MUTE
69 205 H CGC R MUTE
69 205 H CGA R MUTE
69 205 H CGG R MUTE
69 205 H AGA R MUTE
69 205 H AGG R MUTE
69 205 H TAT Y MUTE
69 205 H TAC Y MUTE
71 211 A GCT A WT
71 211 A GCC A
71 211 A GCA A
71 211 A GCG A
71 211 A ATT I MUTE
71 211 A ATC I MUTE
71 211 A ATA I MUTE
71 211 A TTG L MUTE
71 211 A TTA L MUTE
71 211 A CTT L MUTE
71 211 A CTC L MUTE
71 211 A CTA L MUTE
71 211 A CTG L MUTE
71 211 A GTT V MUTE
71 211 A GTC V MUTE
71 211 A GTA V MUTE
71 211 A GTG V MUTE
71 211 A ACT T MUTE
71 211 A ACC T MUTE
71 211 A ACA T MUTE
71 211 A ACG T MUTE
73 217 G GGT G WT
73 217 G GGC G
73 217 G GGA G
73 217 G GGG G
73 217 G TCT S MUTE
73 217 G TCC S MUTE
73 217 G TCA S MUTE
73 217 G TCG S MUTE
73 217 G AGT S MUTE
73 217 G AGC S MUTE
73 217 G ACT T MUTE
73 217 G ACC T MUTE
73 217 G ACA T MUTE
73 217 G ACG T MUTE
73 217 G TGT C MUTE
73 217 G TGC C MUTE
73 217 G GCT A MUTE
73 217 G GCC A MUTE
73 217 G GCA A MUTE
73 217 G GCG A MUTE
74 220 T ACT T
74 220 T ACC T
74 220 T ACA T WT
74 220 T ACG T
74 220 T CCT P MUTE
74 220 T CCC P MUTE
74 220 T CCA P MUTE
74 220 T CCG P MUTE
76 226 L TTG L
76 226 L TTA L WT
76 226 L CTT L
76 226 L CTC L
76 226 L CTA L
76 226 L CTG L
76 226 L GTT V MUTE
76 226 L GTC V MUTE
76 226 L GTA V MUTE
76 226 L GTG V MUTE
77 229 V GTT V
77 229 V GTC V
77 229 V GTA V WT
77 229 V GTG V
77 229 V ATT I MUTE
77 229 V ATC I MUTE
77 229 V ATA I MUTE
82 244 V GTT V
82 244 V GTC V WT
82 244 V GTA V
82 244 V GTG V
82 244 V TGT C MUTE
82 244 V TGC C MUTE
82 244 V GCT A MUTE
82 244 V GCC A MUTE
82 244 V GCA A MUTE
82 244 V GCG A MUTE
82 244 V ATA I MUTE
82 244 V ATC I MUTE
82 244 V ATT I MUTE
82 244 V TTT F MUTE
82 244 V TTC F MUTE
82 244 V GGT G MUTE
82 244 V GGC G MUTE
82 244 V GGA G MUTE
82 244 V GGG G MUTE
82 244 V TCT S MUTE
82 244 V TCC S MUTE
82 244 V TCA S MUTE
82 244 V TCG S MUTE
82 244 V AGT S MUTE
82 244 V AGC S MUTE
82 244 V TTA L MUTE
82 244 V TTG L MUTE
82 244 V CTA L MUTE
82 244 V CTG L MUTE
82 244 V CTT L MUTE
82 244 V CTC L MUTE
82 244 V ACT T MUTE
82 244 V ACC T MUTE
82 244 V ACA T MUTE
82 244 V ACG T MUTE
83 247 N AAC N WT
83 247 N AAT N
83 247 N GAC D MUTE
83 247 N GAT D MUTE
84 250 I ATT I
84 250 I ATC I
84 250 I ATA I WT
84 250 I GCT A MUTE
84 250 I GCC A MUTE
84 250 I GCA A MUTE
84 250 I GCG A MUTE
84 250 I GTT V MUTE
84 250 I GTC V MUTE
84 250 I GTA V MUTE
84 250 I GTG V MUTE
85 253 I ATT I WT
85 253 I ATC I
85 253 I ATA I
85 253 I GTT V MUTE
85 253 I GTC V MUTE
85 253 I GTA V MUTE
85 253 I GTG V MUTE
88 262 N AAT N WT
88 262 N AAC N
88 262 N TCT S MUTE
88 262 N TCC S MUTE
88 262 N TCA S MUTE
88 262 N TCG S MUTE
88 262 N GAT D MUTE
88 262 N GAC D MUTE
88 262 N AGT S MUTE
88 262 N AGC S MUTE
89 265 L TTG L
89 265 L TTA L
89 265 L CTT L
89 265 L CTC L
89 265 L CTA L
89 265 L CTG L WT
89 265 L ATT I MUTE
89 265 L ATC I MUTE
89 265 L ATA I MUTE
89 265 L ATG M MUTE
89 265 L CGT R MUTE
89 265 L CGC R MUTE
89 265 L CGA R MUTE
89 265 L CGG R MUTE
89 265 L AGA R MUTE
89 265 L AGG R MUTE
89 265 L ACT T MUTE
89 265 L ACC T MUTE
89 265 L ACA T MUTE
89 265 L ACG T MUTE
89 265 L GTT V MUTE
89 265 L GTC V MUTE
89 265 L GTA V MUTE
89 265 L GTG V MUTE
90 268 L TTG L WT
90 268 L TTA L
90 268 L CTT L
90 268 L CTC L
90 268 L CTA L
90 268 L CTG L
90 268 L ATG M MUTE
93 277 I ATT I WT
93 277 I ATC I
93 277 I ATA I
93 277 I ATG M MUTE
93 277 I CTT L MUTE
93 277 I CTC L MUTE
93 277 I CTG L MUTE
93 277 I CTA L MUTE
93 277 I TTA L MUTE
93 277 I TTG L MUTE
data/reversetranscriptase.tsv.csv 0 → 100644
View file @ 82c20d8b
#ReverseTranscriptase
Position Position AA Nucléotides CONCLUSION
AA nucléotides SAUVAGE AA FINAL
41 121 M ATG M WT
41 121 M TTG L MUTE
41 121 M TTA L MUTE
41 121 M CTT L MUTE
41 121 M CTC L MUTE
41 121 M CTA L MUTE
41 121 M CTG L MUTE
44 130 E GAA E WT
44 130 E GAG E
44 130 E GAT D MUTE
44 130 E GAC D MUTE
62 184 A GCC A WT
62 184 A GCT A
62 184 A GCG A
62 184 A GCA A
62 184 A GTC V MUTE
62 184 A GTT V MUTE
62 184 A GTG V MUTE
62 184 A GTA V MUTE
65 193 K AAA K WT
65 193 K AAG K
65 193 K CGT R MUTE
65 193 K CGC R MUTE
65 193 K CGA R MUTE
65 193 K CGG R MUTE
65 193 K AGA R MUTE
65 193 K AGG R MUTE
65 193 K GAA E MUTE
65 193 K GAG E MUTE
65 193 K AAT N MUTE
65 193 K AAC N MUTE
67 199 D GAT D
67 199 D GAC D WT
67 199 D AAT N MUTE
67 199 D AAC N MUTE
69 205 T ACT T WT
69 205 T ACC T
69 205 T ACA T
69 205 T ACG T
69 205 T GAT D MUTE
69 205 T GAC D MUTE
69 205 T AAT N MUTE
69 205 T AAC N MUTE
69 205 T TCT S MUTE
69 205 T TCC S MUTE
69 205 T TCA S MUTE
69 205 T TCG S MUTE
69 205 T AGT S MUTE
69 205 T AGC S MUTE
70 208 K AAA K WT
70 208 K AAG K
70 208 K GAA E MUTE
70 208 K GAG E MUTE
70 208 K CGT R MUTE
70 208 K CGC R MUTE
70 208 K CGA R MUTE
70 208 K CGG R MUTE
70 208 K AGA R MUTE
70 208 K AGG R MUTE
74 220 L CTT L
74 220 L CTC L
74 220 L CTA L
74 220 L CTG L
74 220 L TTG L
74 220 L TTA L WT
74 220 L GTT V MUTE
74 220 L GTC V MUTE
74 220 L GTA V MUTE
74 220 L GTG V MUTE
74 220 L ATT I MUTE
74 220 L ATC I MUTE
74 220 L ATA I MUTE
75 223 V GTT V
75 223 V GTC V
75 223 V GTA V WT
75 223 V GTG V
75 223 V GCT A MUTE
75 223 V GCC A MUTE
75 223 V GCA A MUTE
75 223 V GCG A MUTE
75 223 V ATG M MUTE
75 223 V TCT S MUTE
75 223 V TCC S MUTE
75 223 V TCA S MUTE
75 223 V TCG S MUTE
75 223 V AGT S MUTE
75 223 V AGC S MUTE
75 223 V ACT T MUTE
75 223 V ACC T MUTE
75 223 V ACA T MUTE
75 223 V ACG T MUTE
75 223 V ATT I MUTE
75 223 V ATC I MUTE
75 223 V ATA I MUTE
77 229 F TTC F WT
77 229 F TTT F
77 229 F CTC L MUTE
77 229 F CTT L MUTE
77 229 F TTG L MUTE
77 229 F TTA L MUTE
77 229 F CTA L MUTE
77 229 F CTG L MUTE
90 268 V GTT V WT
90 268 V GTC V
90 268 V GTA V
90 268 V GTG V
90 268 V ATT I MUTE
90 268 V ATC I MUTE
90 268 V ATA I MUTE
98 292 A GCT A
98 292 A GCC A
98 292 A GCA A WT
98 292 A GCG A
98 292 S TCT S MUTE
98 292 S TCC S MUTE
98 292 S TCA S MUTE
98 292 S TCG S MUTE
98 292 S AGT S MUTE
98 292 S AGC S MUTE
98 292 S GGT G MUTE
98 292 S GGC G MUTE
98 292 S GGA G MUTE
98 292 S GGG G MUTE
100 298 L TTG L
100 298 L TTA L WT
100 298 L CTT L
100 298 L CTC L
100 298 L CTA L
100 298 L CTG L
100 298 L ATT I MUTE
100 298 L ATC I MUTE
100 298 L ATA I MUTE
101 301 K AAA K WT
101 301 K AAG K
101 301 K GAA E MUTE
101 301 K GAG E MUTE
101 301 K CAT H MUTE
101 301 K CAC H MUTE
101 301 K ATT I MUTE
101 301 K ATC I MUTE
101 301 K ATA I MUTE
101 301 K CCT P MUTE
101 301 K CCC P MUTE
101 301 K CCA P MUTE
101 301 K CCG P MUTE
101 301 K CGT R MUTE
101 301 K CGC R MUTE
101 301 K CGA R MUTE
101 301 K CGG R MUTE
101 301 K AGA R MUTE
101 301 K AGG R MUTE
103 307 K AAA K WT
103 307 K AAG K
103 307 K CAT H MUTE
103 307 K CAC H MUTE
103 307 K AAT N MUTE
103 307 K AAC N MUTE
103 307 K CGT R MUTE
103 307 K CGC R MUTE
103 307 K CGA R MUTE
103 307 K CGG R MUTE
103 307 K AGA R MUTE
103 307 K AGG R MUTE
103 307 K TCT S MUTE
103 307 K TCC S MUTE
103 307 K TCA S MUTE
103 307 K TCG S MUTE
103 307 K AGT S MUTE
103 307 K AGC S MUTE
103 307 K ACT T MUTE
103 307 K ACC T MUTE
103 307 K ACA T MUTE
103 307 K ACG T MUTE
106 316 V GTT V
106 316 V GTC V
106 316 V GTA V WT
106 316 V GTG V
106 316 V GCT A MUTE
106 316 V GCC A MUTE
106 316 V GCA A MUTE
106 316 V GCG A MUTE
106 316 V ATT I MUTE
106 316 V ATC I MUTE
106 316 V ATA I MUTE
106 316 V ATG M MUTE
108 322 V GTA V WT
108 322 V GTT V
108 322 V GTC V
108 322 V GTG V
108 322 V ATA I MUTE
108 322 V ATC I MUTE
108 322 V ATT I MUTE
108 322 V ATM M MUTE
115 343 Y TAT Y WT
115 343 Y TAC Y
115 343 Y TTT F MUTE
115 343 Y TTC F MUTE
116 346 F TTT F WT
116 346 F TTC F
116 346 F TAC Y MUTE
116 346 F TAT Y MUTE
118 352 V GTT V WT
118 352 V GTC V
118 352 V GTA V
118 352 V GTG V
118 352 V ATA I MUTE
118 352 V ATC I MUTE
118 352 V ATT I MUTE
118 352 V ATG M MUTE
138 412 E GAA E
138 412 E GAG E WT
138 412 E GCT A MUTE
138 412 E GCC A MUTE
138 412 E GCA A MUTE
138 412 E GCG A MUTE
138 412 E GGT G MUTE
138 412 E GGC G MUTE
138 412 E GGA G MUTE
138 412 E GGG G MUTE
138 412 E AAA K MUTE
138 412 E AAG K MUTE
138 412 E CAA Q MUTE
138 412 E CAG Q MUTE
138 412 E CGT R MUTE
138 412 E CGC R MUTE
138 412 E CGA R MUTE
138 412 E CGG R MUTE
138 412 E AGA R MUTE
138 412 E AGG R MUTE
138 412 E TCT S MUTE
138 412 E TCC S MUTE
138 412 E TCA S MUTE
138 412 E TCG S MUTE
138 412 E AGT S MUTE
138 412 E AGC S MUTE
151 451 Q CAA Q
151 451 Q CAG Q WT
151 451 Q ATG M MUTE
179 535 V GTT V WT
179 535 V GTC V
179 535 V GTA V
179 535 V GTG V
179 535 V GAT D MUTE
179 535 V GAC D MUTE
179 535 V TTT F MUTE
179 535 V TTC F MUTE
179 535 V ATT I MUTE
179 535 V ATC I MUTE
179 535 V ATA I MUTE
179 535 V TTG L MUTE
179 535 V TTA L MUTE
179 535 V CTT L MUTE
179 535 V CTC L MUTE
179 535 V CTA L MUTE
179 535 V CTG L MUTE
179 535 V ATG M MUTE
179 535 V ACT T MUTE
179 535 V ACC T MUTE
179 535 V ACA T MUTE
179 535 V ACG T MUTE
181 541 Y TAT Y WT
181 541 Y TAC Y
181 541 Y TGT C MUTE
181 541 Y TGC C MUTE
181 541 Y ATT I MUTE
181 541 Y ATC I MUTE
181 541 Y ATA I MUTE
181 541 Y GTT V MUTE
181 541 Y GTC V MUTE
181 541 Y GTA V MUTE
181 541 Y GTG V MUTE
184 550 M ATG M WT
184 550 M ATT I MUTE
184 550 M ATC I MUTE
184 550 M ATA I MUTE
184 550 M GTT V MUTE
184 550 M GTC V MUTE
184 550 M GTA V MUTE
184 550 M GTG V MUTE
188 562 Y TAT Y WT
188 562 Y TAC Y
188 562 Y TGC C MUTE
188 562 Y TGT C MUTE
188 562 Y CAT H MUTE
188 562 Y CAC H MUTE
188 562 Y TTG L MUTE
188 562 Y TTA L MUTE
188 562 Y CTT L MUTE
188 562 Y CTC L MUTE
188 562 Y CTA L MUTE
188 562 Y CTG L MUTE
190 568 G GGT G
190 568 G GGC G
190 568 G GGA G WT
190 568 G GGG G
190 568 G GCT A MUTE
190 568 G GCC A MUTE
190 568 G GCA A MUTE
190 568 G GCG A MUTE
190 568 G TGT C MUTE
190 568 G TGC C MUTE
190 568 G GAA E MUTE
190 568 G GAG E MUTE
190 568 G CAA Q MUTE
190 568 G CAG Q MUTE
190 568 G TCT S MUTE
190 568 G TCC S MUTE
190 568 G TCA S MUTE
190 568 G TCG S MUTE
190 568 G AGT S MUTE
190 568 G AGC S MUTE
190 568 G ACT T MUTE
190 568 G ACC T MUTE
190 568 G ACA T MUTE
190 568 G ACG T MUTE
190 568 G GTT V MUTE
190 568 G GTC V MUTE
190 568 G GTA V MUTE
190 568 G GTG V MUTE
210 628 L TTG L WT
210 628 L TTA L
210 628 L CTT L
210 628 L CTC L
210 628 L CTA L
210 628 L CTG L
210 628 L TGG W MUTE
215 643 T ACT T
215 643 T ACC T WT
215 643 T ACA T
215 643 T ACG T
215 643 T GCT A MUTE
215 643 T GCC A MUTE
215 643 T GCA A MUTE
215 643 T GCG A MUTE
215 643 T TGT C MUTE
215 643 T TGC C MUTE
215 643 T GAT D MUTE
215 643 T GAC D MUTE
215 643 T GAA E MUTE
215 643 T GAG E MUTE
215 643 T GGT G MUTE
215 643 T GGC G MUTE
215 643 T GGA G MUTE
215 643 T GGG G MUTE
215 643 T CAT H MUTE
215 643 T CAC H MUTE
215 643 T ATT I MUTE
215 643 T ATC I MUTE
215 643 T ATA I MUTE
215 643 T TTG L MUTE
215 643 T TTA L MUTE
215 643 T CTT L MUTE
215 643 T CTC L MUTE
215 643 T CTA L MUTE
215 643 T CTG L MUTE
215 643 T AAT N MUTE
215 643 T AAC N MUTE
215 643 T TCT S MUTE
215 643 T TCC S MUTE
215 643 T TCA S MUTE
215 643 T TCG S MUTE
215 643 T AGT S MUTE
215 643 T AGC S MUTE
215 643 T GTT V MUTE
215 643 T GTC V MUTE
215 643 T GTA V MUTE
215 643 T GTG V MUTE
215 643 T TAT Y MUTE
215 643 T TAC Y MUTE
215 643 T TTT F MUTE
215 643 T TTC F MUTE
219 655 K AAA K WT
219 655 K AAG K
219 655 K CAA Q MUTE
219 655 K CAG Q MUTE
219 655 K GAA E MUTE
219 655 K GAG E MUTE
221 661 H CAT H WT
221 661 H CAC H
221 661 H TAT Y MUTE
221 661 H TAC Y MUTE
225 673 P CCT P WT
225 673 P CCC P
225 673 P CCA P
225 673 P CCG P
225 673 P CAT H MUTE
225 673 P CAC H MUTE
227 679 F TTC F WT
227 679 F TTT F
227 679 F TAC C MUTE
227 679 F TAT C MUTE
230 688 M ATG M WT
230 688 M ATT I MUTE
230 688 M ATC I MUTE
230 688 M ATA I MUTE
230 688 M TTG L MUTE
230 688 M TTA L MUTE
230 688 M CTT L MUTE
230 688 M CTC L MUTE
230 688 M CTA L MUTE
230 688 M CTG L MUTE
230 688 M GTT V MUTE
230 688 M GTC V MUTE
230 688 M GTA V MUTE
230 688 M GTG V MUTE
data/sample.bam 0 → 100644
View file @ 82c20d8b
File added
data/sample.bam.bai 0 → 100644
View file @ 82c20d8b
File added
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