# bismark container definition file - see %help section
# Created : 2024-06-12
# Last updated : 2024-06-13
# authors : valentin.vautrot@u-bourgogne.fr
BootStrap: docker
From: ubuntu:22.04
%help
Description : This is a singularity/apptainer container packing bismark v0.24.2. It can be run by mounting a host bowtie2 installation directory, preferably towards /usr/bin/bowtie2/ destination to avoid PATH problems. Python2 is installed with the required librairies to run the miniconda version of bowtie2-2.3.2 present on the ccub.