Add R version contol + results annotation tools for Fraser sif image

R_4.3.3_fraser.def

@@ -2,7 +2,7 @@ BootStrap: docker
 From: ubuntu:22.04
 
 %help 
-This is a singularity container packing R version 4.3.3 [at the time of build. #TODO : R version control] and all the dependencies necessary to run the FRASER ("Find RAre Splicing Events in RNA-seq") package, version 1.14.1, for rnaseq analysis.
+This is a singularity container packing R version 4.3.3 and all the dependencies necessary to run the FRASER ("Find RAre Splicing Events in RNA-seq") package, version 1.14.1, for rnaseq analysis.
 (BiocManager version : 3.18)
 run the command 'apptainer test <image_name>.sif' to see the actual versions of R and FRASER installed
 built-in R packages are installed in /usr/lib/R/library
@@ -26,8 +26,15 @@ apt-get install -y --no-install-recommends \
 wget -qO- https://cloud.r-project.org/bin/linux/ubuntu/marutter_pubkey.asc | tee -a /etc/apt/trusted.gpg.d/cran_ubuntu_key.asc
 add-apt-repository "deb https://cloud.r-project.org/bin/linux/ubuntu jammy-cran40/"
 
-apt-get install -y --no-install-recommends -t jammy-cran40 r-base r-recommended r-base-dev
-apt-get install -y --no-install-recommends build-essential libcurl4-openssl-dev zlib1g-dev libxml2-dev libssl-dev libfontconfig1-dev libharfbuzz-dev libfribidi-dev libfreetype6-dev libpng-dev libtiff5-dev libjpeg-dev libbz2-dev gfortran
+apt-get install -y --no-upgrade --no-install-recommends -t jammy-cran40 r-base-core=4.3.3-1.2204.0 r-base=4.3.3-1.2204.0 r-recommended=4.3.3-1.2204.0 r-base-dev=4.3.3-1.2204.0
+
+echo "installed R version :"
+R --version
+
+apt-get install -y --no-upgrade --no-install-recommends build-essential libcurl4-openssl-dev zlib1g-dev libxml2-dev libssl-dev libfontconfig1-dev libharfbuzz-dev libfribidi-dev libfreetype6-dev libpng-dev libtiff5-dev libjpeg-dev libbz2-dev gfortran
+
+echo "installed R version :"
+R --version
 
 # # install R packages :
 Rscript -e 'install.packages("devtools")'
@@ -35,6 +42,8 @@ Rscript -e 'devtools::install_version("vegan", version ="2.6-4", repos = "https:
 Rscript -e 'devtools::install_version("RcppArmadillo", version ="0.12.8.1.0", repos = "https://cran.r-project.org")'
 Rscript -e 'install.packages("BiocManager", dependencies=TRUE)'
 Rscript -e 'BiocManager::install("FRASER", version = "3.18")'
+Rscript -e 'BiocManager::install("TxDb.Hsapiens.UCSC.hg38.knownGene", version = "3.18")'
+Rscript -e 'BiocManager::install("org.Hs.eg.db", version = "3.18")'
 
 # Clean up
 rm -rf /var/lib/apt/lists/*