Commit 74f1d817 authored by Valentin Vautrot's avatar Valentin Vautrot

Correct %test section and re-add affy for testing functionalities with limma

parent 73b64faa
...@@ -32,6 +32,7 @@ R --version ...@@ -32,6 +32,7 @@ R --version
Rscript -e 'install.packages("BiocManager", dependencies=TRUE)' Rscript -e 'install.packages("BiocManager", dependencies=TRUE)'
Rscript -e 'BiocManager::install("Biobase", version = "3.19")' Rscript -e 'BiocManager::install("Biobase", version = "3.19")'
Rscript -e 'BiocManager::install("oligo", version = "3.19")' Rscript -e 'BiocManager::install("oligo", version = "3.19")'
Rscript -e 'BiocManager::install("affy", version = "3.19")'
Rscript -e 'BiocManager::install("pd.clariom.s.mouse", version = "3.19")' Rscript -e 'BiocManager::install("pd.clariom.s.mouse", version = "3.19")'
Rscript -e 'BiocManager::install("limma", version = "3.19")' Rscript -e 'BiocManager::install("limma", version = "3.19")'
Rscript -e 'BiocManager::install("gcrma", version = "3.19")' Rscript -e 'BiocManager::install("gcrma", version = "3.19")'
...@@ -50,12 +51,14 @@ echo "installed R version :" ...@@ -50,12 +51,14 @@ echo "installed R version :"
R --version R --version
echo "installed oligo package version :" echo "installed oligo package version :"
Rscript -e 'packageVersion("oligo")' Rscript -e 'packageVersion("oligo")'
echo "installed affy package version :"
Rscript -e 'packageVersion("oligo")'
echo "annotation package pd.clariom.s.mouse :" echo "annotation package pd.clariom.s.mouse :"
Rscript -e 'packageVersion("pd.clariom.s.mouse")' Rscript -e 'packageVersion("pd.clariom.s.mouse")'
echo "installed limma version :" echo "installed limma version :"
Rscript -e 'packageVersion("limma")' Rscript -e 'packageVersion("limma")'
echo "installed gcrma :" echo "installed gcrma version :"
Rscript -e 'packageVersion("gcr Rscript -e 'packageVersion("gcrma")'
%labels %labels
Auhtors valentin.vautrot@u-bourgogne.fr Auhtors valentin.vautrot@u-bourgogne.fr
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