From 74f1d8177bbe5fafc274cd69e2506eae69e0b731 Mon Sep 17 00:00:00 2001
From: Valentin <valentin.vautrot@u-bourgogne.fr>
Date: Mon, 24 Jun 2024 17:38:12 +0200
Subject: [PATCH] Correct %test section and re-add affy for testing
functionalities with limma
---
R_4.4.0_affymetrix.def | 7 +++++--
1 file changed, 5 insertions(+), 2 deletions(-)
diff --git a/R_4.4.0_affymetrix.def b/R_4.4.0_affymetrix.def
index 15428cf..ffa622e 100644
--- a/R_4.4.0_affymetrix.def
+++ b/R_4.4.0_affymetrix.def
@@ -32,6 +32,7 @@ R --version
Rscript -e 'install.packages("BiocManager", dependencies=TRUE)'
Rscript -e 'BiocManager::install("Biobase", version = "3.19")'
Rscript -e 'BiocManager::install("oligo", version = "3.19")'
+Rscript -e 'BiocManager::install("affy", version = "3.19")'
Rscript -e 'BiocManager::install("pd.clariom.s.mouse", version = "3.19")'
Rscript -e 'BiocManager::install("limma", version = "3.19")'
Rscript -e 'BiocManager::install("gcrma", version = "3.19")'
@@ -50,12 +51,14 @@ echo "installed R version :"
R --version
echo "installed oligo package version :"
Rscript -e 'packageVersion("oligo")'
+echo "installed affy package version :"
+Rscript -e 'packageVersion("oligo")'
echo "annotation package pd.clariom.s.mouse :"
Rscript -e 'packageVersion("pd.clariom.s.mouse")'
echo "installed limma version :"
Rscript -e 'packageVersion("limma")'
-echo "installed gcrma :"
-Rscript -e 'packageVersion("gcr
+echo "installed gcrma version :"
+Rscript -e 'packageVersion("gcrma")'
%labels
Auhtors valentin.vautrot@u-bourgogne.fr
--
2.17.1