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gad-public
singularity
Commits
74f1d817
Commit
74f1d817
authored
Jun 24, 2024
by
Valentin Vautrot
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Correct %test section and re-add affy for testing functionalities with limma
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73b64faa
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R_4.4.0_affymetrix.def
R_4.4.0_affymetrix.def
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R_4.4.0_affymetrix.def
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74f1d817
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@@ -32,6 +32,7 @@ R --version
Rscript -e 'install.packages("BiocManager", dependencies=TRUE)'
Rscript -e 'BiocManager::install("Biobase", version = "3.19")'
Rscript -e 'BiocManager::install("oligo", version = "3.19")'
Rscript -e 'BiocManager::install("affy", version = "3.19")'
Rscript -e 'BiocManager::install("pd.clariom.s.mouse", version = "3.19")'
Rscript -e 'BiocManager::install("limma", version = "3.19")'
Rscript -e 'BiocManager::install("gcrma", version = "3.19")'
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@@ -50,12 +51,14 @@ echo "installed R version :"
R --version
echo "installed oligo package version :"
Rscript -e 'packageVersion("oligo")'
echo "installed affy package version :"
Rscript -e 'packageVersion("oligo")'
echo "annotation package pd.clariom.s.mouse :"
Rscript -e 'packageVersion("pd.clariom.s.mouse")'
echo "installed limma version :"
Rscript -e 'packageVersion("limma")'
echo "installed gcrma :"
Rscript -e 'packageVersion("gcr
echo "installed gcrma
version
:"
Rscript -e 'packageVersion("gcr
ma")'
%labels
Auhtors valentin.vautrot@u-bourgogne.fr
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