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gad-public
singularity
Commits
ffa4d431
Commit
ffa4d431
authored
Mar 22, 2024
by
Valentin Vautrot
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Cleaning up .def file script and useless comments
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7d92b402
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picard_3.0.0.def
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picard_3.0.0.def
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ffa4d431
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@@ -3,7 +3,7 @@ From: centos:8
%help
This is a singularity container packing picard tools v3.0.0 and java 17. An R installation (4.3.3) is also provided as it is required by some picard tools.
Author : yannis.duffourd@u-bourgogne.fr, valentin.vautrot@u-bourgogne.fr
Author
s
: yannis.duffourd@u-bourgogne.fr, valentin.vautrot@u-bourgogne.fr
This singularity recipe is open source and free. Please redistribute it as well.
No warranty is provided.
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@@ -16,10 +16,6 @@ dnf update -y --exclude=filesystem
dnf install -y epel-release wget
dnf --enablerepo=powertools install -y openblas-devel
# # install R with (old) java included
# dnf install -y R-4.3.3-1.el8.x86_64
# dnf remove -y java-1.8.0-openjdk java-1.8.0-openjdk-devel java-1.8.0-openjdk-headless
# # install R
dnf install -y R-core-4.3.3-1.el8.x86_64
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@@ -45,7 +41,7 @@ Java version 17.0.1
export PATH=$PATH:$JAVA_HOME/bin
%runscript
echo "java version : "
echo "
##
java version : "
java -version
echo "R version : "
echo "
##
R version : "
R --version
\ No newline at end of file
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