Commit ec5e1c7c authored by Valentin Vautrot's avatar Valentin Vautrot

suppressing useless packages and adding OS version info

parent 6f5a90de
...@@ -4,7 +4,7 @@ From: centos:8 ...@@ -4,7 +4,7 @@ From: centos:8
%help %help
# in progress # in progress
This is a singularity container packing a python 3.9.6 (only version) environment with all the packages necessary to execute all the python scripts present in the version 2.10.0 of the gad pipeline. This is a singularity container packing a python 3.9.6 (only version) environment with all the packages necessary to execute all the python scripts present in the version 2.10.0 of the gad pipeline.
Python 3.9.6 is the latest available version in CentOS 8 used for this build. Python v3.9.6 is the latest available version in CentOS v8.5.211 used for this build.
Authors : valentin.vautrot@u-bourgogne.fr Authors : valentin.vautrot@u-bourgogne.fr
python3.9.6 is installed in /usr/bin/python3.9/ python3.9.6 is installed in /usr/bin/python3.9/
non-default python3.9.6 libs are installed in /usr/lib/python3.9/site-packages/ non-default python3.9.6 libs are installed in /usr/lib/python3.9/site-packages/
...@@ -42,7 +42,6 @@ mv /data/VcfTools.py /usr/lib/python3.9/site-packages/ ...@@ -42,7 +42,6 @@ mv /data/VcfTools.py /usr/lib/python3.9/site-packages/
mv /data/CnvTools.py /usr/lib/python3.9/site-packages/ mv /data/CnvTools.py /usr/lib/python3.9/site-packages/
# install python pip packages # install python pip packages
pip3.9 install --upgrade -t /usr/lib/python3.9/site-packages/ wheel
pip3.9 install --upgrade -t /usr/lib/python3.9/site-packages/ labkey pip3.9 install --upgrade -t /usr/lib/python3.9/site-packages/ labkey
pip3.9 install --upgrade -t /usr/lib/python3.9/site-packages/ numpy pip3.9 install --upgrade -t /usr/lib/python3.9/site-packages/ numpy
pip3.9 install --upgrade -t /usr/lib/python3.9/site-packages/ matplotlib pip3.9 install --upgrade -t /usr/lib/python3.9/site-packages/ matplotlib
...@@ -67,4 +66,5 @@ python3 -m pip list ...@@ -67,4 +66,5 @@ python3 -m pip list
%labels %labels
container v0.1 container v0.1
Creation date : 2023-09-13 Creation date : 2023-09-13
python version 3.9.6 Contained OS version : CentOS 8.5.211
\ No newline at end of file Contained python version : 3.9.6
\ No newline at end of file
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