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Commit 73b64faa authored by Valentin Vautrot's avatar Valentin Vautrot
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Add gcrma package for normalisation

parent 255c9638
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R_4.4.0_affymetrix.def
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...@@ -34,6 +34,7 @@ Rscript -e 'BiocManager::install("Biobase", version = "3.19")' ...@@ -34,6 +34,7 @@ Rscript -e 'BiocManager::install("Biobase", version = "3.19")'
Rscript -e 'BiocManager::install("oligo", version = "3.19")' Rscript -e 'BiocManager::install("oligo", version = "3.19")'
Rscript -e 'BiocManager::install("pd.clariom.s.mouse", version = "3.19")' Rscript -e 'BiocManager::install("pd.clariom.s.mouse", version = "3.19")'
Rscript -e 'BiocManager::install("limma", version = "3.19")' Rscript -e 'BiocManager::install("limma", version = "3.19")'
Rscript -e 'BiocManager::install("gcrma", version = "3.19")'
# Clean up # Clean up
rm -rf /var/lib/apt/lists/* rm -rf /var/lib/apt/lists/*
...@@ -53,6 +54,8 @@ echo "annotation package pd.clariom.s.mouse :" ...@@ -53,6 +54,8 @@ echo "annotation package pd.clariom.s.mouse :"
Rscript -e 'packageVersion("pd.clariom.s.mouse")' Rscript -e 'packageVersion("pd.clariom.s.mouse")'
echo "installed limma version :" echo "installed limma version :"
Rscript -e 'packageVersion("limma")' Rscript -e 'packageVersion("limma")'
echo "installed gcrma :"
Rscript -e 'packageVersion("gcr
%labels %labels
Auhtors valentin.vautrot@u-bourgogne.fr Auhtors valentin.vautrot@u-bourgogne.fr
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