Add ggrepel and tidyverse packages for plotting

R_4.4.0_affymetrix.def

@@ -21,7 +21,7 @@ apt-get install -y --no-install-recommends locales language-pack-fr software-pro
 wget -qO- https://cloud.r-project.org/bin/linux/ubuntu/marutter_pubkey.asc | tee -a /etc/apt/trusted.gpg.d/cran_ubuntu_key.asc
 add-apt-repository "deb https://cloud.r-project.org/bin/linux/ubuntu jammy-cran40/"
 
-apt-get install -y --no-upgrade --no-install-recommends -t jammy-cran40 r-base-core=4.4.0-1.2204.0 r-base=4.4.0-1.2204.0 r-recommended=4.4.0-1.2204.0 r-base-dev=4.4.0-1.2204.0
+apt-get install -y --no-upgrade --no-install-recommends -t jammy-cran40 r-cran-mass=7.3-60-2.2204.0 r-base-core=4.4.0-1.2204.0 r-base=4.4.0-1.2204.0 r-recommended=4.4.0-1.2204.0 r-base-dev=4.4.0-1.2204.0
 
 apt-get install -y --no-upgrade --no-install-recommends build-essential libcurl4-openssl-dev zlib1g-dev libxml2-dev libssl-dev libfontconfig1-dev libharfbuzz-dev libfribidi-dev libfreetype6-dev libpng-dev libtiff5-dev libjpeg-dev libbz2-dev gfortran
 
@@ -39,6 +39,9 @@ Rscript -e 'BiocManager::install("gcrma", version = "3.19")'
 Rscript -e 'BiocManager::install("biomaRt", version = "3.19")'
 Rscript -e 'BiocManager::install("affycoretools", version = "3.19")'
 
+Rscript -e 'install.packages("ggrepel")'
+Rscript -e 'install.packages("tidyverse")'
+
 # Clean up
 rm -rf /var/lib/apt/lists/*