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Commit 0aa234b9 authored by Yannis Duffourd's avatar Yannis Duffourd
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Adding wheel to python packages

parent 6c35a66d
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bionano_solve_3.6.def
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...@@ -28,7 +28,7 @@ python3.7 /home/bionano/tools/pipeline/1.0/Pipeline/1.0/pipelineCL.py \ ...@@ -28,7 +28,7 @@ python3.7 /home/bionano/tools/pipeline/1.0/Pipeline/1.0/pipelineCL.py \
mkdir ${SINGULARITY_ROOTFS}/data mkdir ${SINGULARITY_ROOTFS}/data
%files %files
/data/bionano/access.tools.tgz /home/bionano/access.tools.tgz /data/bionano/3.6.1/access.tools.tgz /home/bionano/access.tools.tgz
%post %post
sed -i 's/mirrorlist/#mirrorlist/g' /etc/yum.repos.d/CentOS-* sed -i 's/mirrorlist/#mirrorlist/g' /etc/yum.repos.d/CentOS-*
...@@ -110,6 +110,7 @@ make altinstall ...@@ -110,6 +110,7 @@ make altinstall
/opt/bionano/bin/python3.7 -m pip install --upgrade -t /opt/bionano/lib/python3.7/site-packages xgboost==0.90 /opt/bionano/bin/python3.7 -m pip install --upgrade -t /opt/bionano/lib/python3.7/site-packages xgboost==0.90
/opt/bionano/bin/python3.7 -m pip install --upgrade -t /opt/bionano/lib/python3.7/site-packages joblib==0.13.2 /opt/bionano/bin/python3.7 -m pip install --upgrade -t /opt/bionano/lib/python3.7/site-packages joblib==0.13.2
/opt/bionano/bin/python3.7 -m pip install --upgrade -t /opt/bionano/lib/python3.7/site-packages xlrd /opt/bionano/bin/python3.7 -m pip install --upgrade -t /opt/bionano/lib/python3.7/site-packages xlrd
/opt/bionano/bin/python3.7 -m pip install --upgrade -t /opt/bionano/lib/python3.7/site-packages wheel
/opt/bionano/bin/python3.7 -m pip install --upgrade -t /opt/bionano/lib/python3.7/site-packages /home/bionano/tools/pipeline/1.0/bionano_packages/pyBionano /opt/bionano/bin/python3.7 -m pip install --upgrade -t /opt/bionano/lib/python3.7/site-packages /home/bionano/tools/pipeline/1.0/bionano_packages/pyBionano
/opt/bionano/bin/python3.7 -m pip install --upgrade -t /opt/bionano/lib/python3.7/site-packages /home/bionano/tools/pipeline/1.0/bionano_packages/SVConfModels /opt/bionano/bin/python3.7 -m pip install --upgrade -t /opt/bionano/lib/python3.7/site-packages /home/bionano/tools/pipeline/1.0/bionano_packages/SVConfModels
/opt/bionano/bin/python3.7 -m pip install --upgrade -t /opt/bionano/lib/python3.7/site-packages /home/bionano/tools/pipeline/1.0/bionano_packages/lohdetection /opt/bionano/bin/python3.7 -m pip install --upgrade -t /opt/bionano/lib/python3.7/site-packages /home/bionano/tools/pipeline/1.0/bionano_packages/lohdetection
......
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