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Commit 5e0a7672 authored by Simon Verdez's avatar Simon Verdez
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ajout profondeur

parent e2416800
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Showing with 3 additions and 3 deletions
Master.sh
View file @ 5e0a7672
......@@ -18,8 +18,8 @@ fi
if [ ! -e /work/gad/sv347413/epilepsie/tmp_res/$i/header_CNV.vcf ]
then
echo "CNV"
cp /work/gad/sv347413/epilepsie/Pipeline/header_CNV.vcf /work/gad/sv347413/epilepsie/tmp_res/$i/header_CNV.vcf
echo "CNV"
cp /work/gad/sv347413/epilepsie/Pipeline/header_CNV.vcf /work/gad/sv347413/epilepsie/tmp_res/$i/header_CNV.vcf
fi
if [ ! -e /work/gad/sv347413/epilepsie/tmp_res/$i/$i.CNV.vcf ]
......@@ -32,5 +32,5 @@ fi
if [ ! -e /work/gad/sv347413/epilepsie/results_html/$i.html ]
then
echo "html"
python2.7 create_html_v2.py /work/gad/sv347413/epilepsie/tmp_res/$i/$i.SNP.vcf /work/gad/sv347413/epilepsie/tmp_res/$i/$i.CNV.vcf /work/gad/sv347413/HLAscan/results/$i/Report > /work/gad/sv347413/epilepsie/results_html/$i.html
python2.7 create_html_v2.py /work/gad/sv347413/epilepsie/tmp_res/$i/$i.SNP.vcf /work/gad/sv347413/epilepsie/tmp_res/$i/$i.CNV.vcf /work/gad/sv347413/HLAscan/results/$i/Report /work/gad/sv377413/HLAscan/bam_tmp/$i.bam > /work/gad/sv347413/epilepsie/results_html/$i.html
fi
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