HLAlist /work/gad/shared/analyse/test_HLA/HLAscan_v1.0/hla-ref-5gene/gene_list pharmagkbase /work/gad/sv347413/epilepsie/Pipeline/pharmgkb_v2.vcf pharmagktab /work/gad/sv347413/epilepsie/Pipeline/tableau_pharmgkb.tsv omim /work/gad/sv347413/epilepsie/Pipeline/tableau_OMIM.tsv header /work/gad/sv347413/epilepsie/Pipeline/header_CNV.vcf
reference /work/gad/shared/pipeline/hg19/index/hg19_essential.fa
