Upload New File

scripts_CNV/get_expr.sh

+#!/bin/bash
+
+
+WHERE=$1
+
+for file in $WHERE/*.txt
+        do
+        TAD=$(basename $file _list_genes.txt)
+	mkdir -p $WHERE/$TAD
+	for gene in $(cat $file)
+		do
+		head -n 1 /work/gad/shared/analyse/Integration/RNA_SEQ/normalized_counts.csv >> $WHERE/$TAD/$gene.txt
+		grep $gene /work/gad/shared/analyse/Integration/RNA_SEQ/normalized_counts.csv >> $WHERE/$TAD/$gene.txt
+	done
+done
+
+