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gad-public
integration
Commits
ea458063
Commit
ea458063
authored
Dec 06, 2022
by
Marine Bergot
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get_expr.sh
scripts_CNV/get_expr.sh
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ea458063
#!/bin/bash
WHERE
=
$1
for
file
in
$WHERE
/
*
.txt
do
TAD
=
$(
basename
$file
_list_genes.txt
)
mkdir
-p
$WHERE
/
$TAD
for
gene
in
$(
cat
$file
)
do
head
-n
1 /work/gad/shared/analyse/Integration/RNA_SEQ/normalized_counts.csv
>>
$WHERE
/
$TAD
/
$gene
.txt
grep
$gene
/work/gad/shared/analyse/Integration/RNA_SEQ/normalized_counts.csv
>>
$WHERE
/
$TAD
/
$gene
.txt
done
done
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