#for i in $(pwd)/Analyses_genes/split_files/*.bed; do bedtools intersect -b $i -a $(pwd)/Homo_sapiens.GRCh38.108_correct.bed -wo > $(pwd)/Analyses_genes/TADs_genes/$(basename $i .bed)_genes.bed; done
#remove transcripts
echo"transcript"
#for i in $(pwd)/Analyses_genes/TADs_genes/*_genes.bed; do awk -F"\t" '!_[$4]++' $i > $(pwd)/Analyses_genes/TADs_sort/$(basename $i _genes.bed)_genes_sort.bed; done
#get genes list
echo"genes list"
#for i in $(pwd)/Analyses_genes/TADs_sort/*.bed; do python $PATH_SCRIPT/get_genes_list.py $i $(pwd)/Analyses_genes/TADs_list_genes/$(basename $i _genes_sort.bed)_list_genes.txt; done
#remove "
#for i in $(pwd)/Analyses_genes/TADs_list_genes/*_list_genes.txt; do sed -i 's/"//g' $i; done