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a4069159 · Marine Bergot · e7a96eee · a4069159
Commit a4069159 authored Dec 06, 2022 by Marine Bergot
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launch_plot.sh scripts_CNV/launch_plot.sh +17 -0

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--- a/scripts_CNV/launch_plot.sh
+++ b/scripts_CNV/launch_plot.sh
+#!/bin/bash
+
+
+source /work/gad/shared/pipeline/utils/ggsashimienv.sh
+
+
+for folder in $1/TAD*/
+	do 
+	mkdir -p $folder/plots
+	for file in $folder/*_reverse.txt
+		do
+		gene=$(basename $file _reverse.txt)
+		TAD=$(basename $folder)
+		Rscript /work/gad/shared/analyse/HiC/scripts/plot_gene.R $file $TAD $gene $1
+	done
+done
+