Update scripts_softs.bash

scripts_softs.bash

 #!/bin/bash
 
 # softs needed
-# bwa
-conda install -c bioconda -y bwa
+cd 
+wget https://github.com/broadinstitute/gatk/releases/download/4.3.0.0/gatk-4.3.0.0.zip
+unzip gatk-4.3.0.0.zip
 
-# samtools
-conda install -c bioconda -y samtools
 
-# picard tools
-conda install -c bioconda -y picard
+# data 
+mkdir TP
+curl https://cloud.u-bourgogne.fr/index.php/s/dTCSXogHRc7rGnG/download/sample.bam --output ~/TP/sample.bam
+curl https://cloud.u-bourgogne.fr/index.php/s/sxwdwyff6s3Cq2z/download/1.bam --output ~/TP/1.bam 
+curl https://cloud.u-bourgogne.fr/index.php/s/aK9sHJ276r779ab/download/hg19.tar --output hg19.tar && tar -xvf hg19.tar
 
-# GATK 3
-conda install -c bioconda -y gatk