Commits · 2740da81af033d6b4a20a55ff33f419860649e1a · Anne-Sophie Denommé-Pichon / STR · GitLab

15 Feb, 2020 11 commits
- Fix Markdown · 2740da81
  Anne-Sophie Denommé-Pichon authored Feb 15, 2020
  
  2740da81
- Update .gitignore · 274e0ce8
  Anne-Sophie Denommé-Pichon authored Feb 15, 2020
  
  274e0ce8
- Change job number · b0fb967d
  Anne-Sophie Denommé-Pichon authored Feb 15, 2020
  
  b0fb967d
- Change input file to be easily applied to dijen · cab9082c
  Anne-Sophie Denommé-Pichon authored Feb 15, 2020
  
  cab9082c
- Create script to launch EHDN outlier analyses on SGE · 65481d14
  Anne-Sophie Denommé-Pichon authored Feb 15, 2020
  
  65481d14
- Fix dependency information errors · b2269fee
  Anne-Sophie Denommé-Pichon authored Feb 15, 2020
  
  b2269fee
- Change ehdn outlier analysis script to handle qsub · b069b9cc
  Anne-Sophie Denommé-Pichon authored Feb 15, 2020
  
  b069b9cc
- Do EHDN outlier analyses (not parallelized) · 62eed830
  Anne-Sophie Denommé-Pichon authored Feb 15, 2020
  
  62eed830
- Add README · 3a695c04
  Anne-Sophie Denommé-Pichon authored Feb 15, 2020
  
  3a695c04
- Create script to check parallelization of launch_pipeline.sh · b27830b3
  Anne-Sophie Denommé-Pichon authored Feb 15, 2020
  
  b27830b3
- Add script to generate manifest by patient for EHDN · dc46dad7
  Anne-Sophie Denommé-Pichon authored Feb 15, 2020
  
  dc46dad7
09 Feb, 2020 3 commits
- Add a column for outliers < 3 · c9d1fe18
  Anne-Sophie Denommé-Pichon authored Feb 09, 2020
  
  c9d1fe18
- Keep only zscore >= 1.5 and dijen with outliers · b79a0466
  Anne-Sophie Denommé-Pichon authored Feb 09, 2020
  
  b79a0466
- Create script to identify outliers from STR results · 8ebd33d3
  Anne-Sophie Denommé-Pichon authored Feb 09, 2020
  
  8ebd33d3
03 Feb, 2020 2 commits
- Handle all tools from the input tsv files when plotting · 1e5b9d7d
  Anne-Sophie Denommé-Pichon authored Feb 03, 2020
  
  1e5b9d7d
- Create script to draw html graph to visualize STR results · d17f9a99
  Anne-Sophie Denommé-Pichon authored Feb 03, 2020
  
  d17f9a99
18 Dec, 2019 1 commit
- Add Tredparse and GangSTR to getResults.py · 4e810be0
  Anne-Sophie Denommé-Pichon authored Dec 18, 2019
  
  4e810be0
15 Dec, 2019 2 commits
- Add script to get STR tools results at all locus · 23fe58b7
  Anne-Sophie Denommé-Pichon authored Dec 16, 2019
  
  23fe58b7
- Add script to get STR tools results at the fragile X locus · ca5d565b
  Anne-Sophie Denommé-Pichon authored Dec 15, 2019
  
  ca5d565b
09 Dec, 2019 1 commit
- Create pipeline to launch STR detection tools on GAD genomes cohort · 4386a668
  Anne-Sophie Denommé-Pichon authored Dec 09, 2019
  
  4386a668
08 Dec, 2019 1 commit
- Update queue and add stretch wrapper · 85802bc1
  Anne-Sophie Denommé-Pichon authored Dec 08, 2019
  
  85802bc1
18 Nov, 2019 4 commits
- Create wrapper for STRetch · 5b438991
  Anne-Sophie Denommé-Pichon authored Nov 18, 2019
  
  5b438991
- Change queue on SGE · 49c1f48d
  Anne-Sophie Denommé-Pichon authored Nov 18, 2019
  
  49c1f48d
- Create wrapper for sort bam per read · e953228e
  Anne-Sophie Denommé-Pichon authored Nov 18, 2019
  
  e953228e
- Create wrappers for STRetch and STRScan · dbc2c1c7
  Anne-Sophie Denommé-Pichon authored Nov 18, 2019
  
  dbc2c1c7
04 Nov, 2019 6 commits
- Create wrapper and wrapper launcher for HipSTR · 1c9c216b
  Anne-Sophie Denommé-Pichon authored Nov 05, 2019
  
  1c9c216b
- Create wrapper and wrapper launcher for LobSTR · 3f43954a
  Anne-Sophie Denommé-Pichon authored Nov 04, 2019
  
  3f43954a
- Create script to launch GangSTR wrapper · 7a5daf35
  Anne-Sophie Denommé-Pichon authored Nov 04, 2019
  
  7a5daf35
- Create wrapper_gangstr.sh · 2db647fe
  Anne-Sophie Denommé-Pichon authored Nov 04, 2019
  
  2db647fe
- Add comment on stdout when launching Tredparse · 2fb03cc5
  Anne-Sophie Denommé-Pichon authored Nov 04, 2019
  
  2fb03cc5
- Change output directory and queue type for jobs on qsub · 18a31ff2
  Anne-Sophie Denommé-Pichon authored Nov 04, 2019
  
  18a31ff2
03 Nov, 2019 5 commits
- Change local output directory and add time stamp in log file names · b38301db
  Anne-Sophie Denommé-Pichon authored Nov 03, 2019
  
  b38301db
- Create wrapper and wrapper launcher for Tredparse · 7264b1f2
  Anne-Sophie Denommé-Pichon authored Nov 03, 2019
  
  7264b1f2
- Change the output prefix and add time stamp in the name · f930d128
  Anne-Sophie Denommé-Pichon authored Nov 03, 2019
  
  f930d128
- Add --local option to the wrapper launcher for ExpansionHunter · 776de494
  Anne-Sophie Denommé-Pichon authored Nov 03, 2019
  
  776de494
- Create a wrapper launcher for ExpansionHunter · f6feb237
  Anne-Sophie Denommé-Pichon authored Nov 03, 2019
  
  f6feb237
02 Nov, 2019 1 commit
- Create wrapper for ExpansionHunter · ac7f9b9e
  Anne-Sophie Denommé-Pichon authored Nov 03, 2019
  
  ac7f9b9e