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Commit f9ce38a0 authored by Anne-Sophie Denommé-Pichon's avatar Anne-Sophie Denommé-Pichon
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Use new installation of Tredparse

parent 8f72cc1f
master 0.0.1
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config.sh
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...@@ -27,8 +27,8 @@ PARALLEL_JOB_COUNT="16" ...@@ -27,8 +27,8 @@ PARALLEL_JOB_COUNT="16"
EH="/work/gad/shared/bin/expansionhunter/ExpansionHunter-v3.1.2-linux_x86_64/bin/ExpansionHunter" EH="/work/gad/shared/bin/expansionhunter/ExpansionHunter-v3.1.2-linux_x86_64/bin/ExpansionHunter"
EH_VARIANT_CATALOG="/work/gad/shared/bin/expansionhunter/ExpansionHunter-v3.1.2-linux_x86_64/variant_catalog/hg19/variant_catalog.json" EH_VARIANT_CATALOG="/work/gad/shared/bin/expansionhunter/ExpansionHunter-v3.1.2-linux_x86_64/variant_catalog/hg19/variant_catalog.json"
TREDPARSE="/work/gad/shared/bin/tredparse/Tredparse-20190901/bin/tred.py" TREDPARSE="/work/gad/shared/bin/tredparse/Tredparse-20190901-2/bin/tred.py"
TREDPARSE_VENV="/work/gad/shared/bin/tredparse/Tredparse-20190901/bin/activate" # To load Tredparse in a virtual environment TREDPARSE_VENV="/work/gad/shared/bin/tredparse/Tredparse-20190901-2/bin/activate" # To load Tredparse in a virtual environment
GANGSTR="/work/gad/shared/bin/gangstr/GangSTR-2.4/bin/GangSTR" GANGSTR="/work/gad/shared/bin/gangstr/GangSTR-2.4/bin/GangSTR"
GANGSTR_REGIONS="/work/gad/shared/bin/gangstr/STRregions/hg19_ver13_1.bed" GANGSTR_REGIONS="/work/gad/shared/bin/gangstr/STRregions/hg19_ver13_1.bed"
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