Skip to content
Projects
Groups
Snippets
Help
This project
Loading...
Sign in / Register
Toggle navigation
S
STR
Project
Project
Details
Activity
Cycle Analytics
Repository
Repository
Files
Commits
Branches
Tags
Contributors
Graph
Compare
Charts
Issues
0
Issues
0
List
Board
Labels
Milestones
Merge Requests
0
Merge Requests
0
CI / CD
CI / CD
Pipelines
Jobs
Schedules
Charts
Wiki
Wiki
Snippets
Snippets
Members
Members
Collapse sidebar
Close sidebar
Activity
Graph
Charts
Create a new issue
Jobs
Commits
Issue Boards
Open sidebar
Anne-Sophie Denommé-Pichon
STR
Commits
f9ce38a0
Commit
f9ce38a0
authored
Sep 28, 2021
by
Anne-Sophie Denommé-Pichon
Browse files
Options
Browse Files
Download
Email Patches
Plain Diff
Use new installation of Tredparse
parent
8f72cc1f
Hide whitespace changes
Inline
Side-by-side
Showing
1 changed file
with
2 additions
and
2 deletions
+2
-2
config.sh
config.sh
+2
-2
No files found.
config.sh
View file @
f9ce38a0
...
...
@@ -27,8 +27,8 @@ PARALLEL_JOB_COUNT="16"
EH
=
"/work/gad/shared/bin/expansionhunter/ExpansionHunter-v3.1.2-linux_x86_64/bin/ExpansionHunter"
EH_VARIANT_CATALOG
=
"/work/gad/shared/bin/expansionhunter/ExpansionHunter-v3.1.2-linux_x86_64/variant_catalog/hg19/variant_catalog.json"
TREDPARSE
=
"/work/gad/shared/bin/tredparse/Tredparse-20190901/bin/tred.py"
TREDPARSE_VENV
=
"/work/gad/shared/bin/tredparse/Tredparse-20190901/bin/activate"
# To load Tredparse in a virtual environment
TREDPARSE
=
"/work/gad/shared/bin/tredparse/Tredparse-20190901
-2
/bin/tred.py"
TREDPARSE_VENV
=
"/work/gad/shared/bin/tredparse/Tredparse-20190901
-2
/bin/activate"
# To load Tredparse in a virtual environment
GANGSTR
=
"/work/gad/shared/bin/gangstr/GangSTR-2.4/bin/GangSTR"
GANGSTR_REGIONS
=
"/work/gad/shared/bin/gangstr/STRregions/hg19_ver13_1.bed"
...
...
Write
Preview
Markdown
is supported
0%
Try again
or
attach a new file
Attach a file
Cancel
You are about to add
0
people
to the discussion. Proceed with caution.
Finish editing this message first!
Cancel
Please
register
or
sign in
to comment