Change the output prefix and add time stamp in the name

parent 776de494
*~
*.bam
*.bai
*.vcf
*.json
*.sh.o*
*.sh.po*
*.failed
......
......@@ -15,7 +15,7 @@
## Known bugs : None
INPUTFILE=/archive/gad/shared/bam_new_genome_temp/dijen017.bam
OUTPUTPREFIX=test
OUTPUTPREFIX=/user1/gad/an1770de/Tools/ExpansionHunter/20191102/"$(date +"%F_%H-%M-%S")"
LOGFILE=/user1/gad/an1770de/Tools/ExpansionHunter/20191102/log.log
# Launch the script on local host with --local option and on SGE with qsub without the --local option
......
......@@ -64,7 +64,7 @@ echo "command : /work/gad/shared/bin/expansionhunter/ExpansionHunter-v3.1.2-linu
expansionhunter_exitcode=$?
# Remove .bam and .bai symbolic links
rm "$TMPDIR/$(basenam e"$INPUTFILE")"
rm "$TMPDIR/$(basename "$INPUTFILE")"
rm "$TMPDIR/$(basename "$INPUTFILE").bai"
rmdir "$TMPDIR"
......
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