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Commit 2fb03cc5 authored by Anne-Sophie Denommé-Pichon's avatar Anne-Sophie Denommé-Pichon
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Add comment on stdout when launching Tredparse

parent 18a31ff2
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wrapper_tredparse.sh
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...@@ -49,7 +49,7 @@ TREDPARSE="/work/gad/shared/bin/tredparse/Tredparse-20190901" ...@@ -49,7 +49,7 @@ TREDPARSE="/work/gad/shared/bin/tredparse/Tredparse-20190901"
. "$TREDPARSE/bin/activate" . "$TREDPARSE/bin/activate"
# Launch script command and check exit code # Launch script command and check exit code
echo "command : FIXME" echo "command : "$TREDPARSE/bin/tred.py" "$INPUTFILE" --workdir "$OUTPUTDIR" --ref hg19"
"$TREDPARSE/bin/tred.py" "$INPUTFILE" --workdir "$OUTPUTDIR" --ref hg19 "$TREDPARSE/bin/tred.py" "$INPUTFILE" --workdir "$OUTPUTDIR" --ref hg19
tredparse_exitcode=$? tredparse_exitcode=$?
......
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