Remove commands creating file.failed on error

wrapper_delete.sh

@@ -23,7 +23,6 @@ if [ -z "$SAMPLE" ]
 then
     echo "Sample is not specified"
     echo "$(date +"%F_%H-%M-%S"): END"
-    touch delete.failed
     exit 1
 fi
 
@@ -40,7 +39,6 @@ echo "delete exit code : $delete_exitcode"
 if [ $delete_exitcode != 0 ]
 then
     echo "$(date +"%F_%H-%M-%S"): END"
-    touch delete.failed
     exit 1
 fi
 

wrapper_ehdn.sh

@@ -24,7 +24,6 @@ if [ ! -f "$INPUTFILE" ]
 then
     echo "Input file '$INPUTFILE' does not exist"
     echo "$(date +"%F_%H-%M-%S"): END"
-    touch ehdn.failed
     exit 1
 fi
 
@@ -33,7 +32,6 @@ if [ -z "$OUTPUTPREFIX" ]
 then
     echo "Output prefix is not specified"
     echo "$(date +"%F_%H-%M-%S"): END"
-    touch ehdn.failed
     exit 1
 fi
 
@@ -67,7 +65,6 @@ echo "ehdn exit code : $ehdn_exitcode"
 if [ $ehdn_exitcode != 0 ]
 then
     echo "$(date +"%F_%H-%M-%S"): END"
-    touch ehdn.failed
     exit 1
 fi
 

wrapper_ehdn_outlier.sh

@@ -27,7 +27,6 @@ if [ -z "$CASE" ]
 then
     echo "Dijen is not specified"
     echo "$(date +"%F_%H-%M-%S"): END"
-    touch ehdn_outlier.failed
     exit 1
 fi
 
@@ -53,7 +52,6 @@ echo "ehdn_outlier exit code : $ehdn_outlier_exitcode"
 if [ $ehdn_outlier_exitcode != 0 ]
 then
     echo "$(date +"%F_%H-%M-%S"): END"
-    touch ehdn_outlier.failed
     exit 1
 fi
 
@@ -69,7 +67,6 @@ echo "ehdn_outlier exit code : $ehdn_outlier_exitcode"
 if [ $ehdn_outlier_exitcode != 0 ]
 then
     echo "$(date +"%F_%H-%M-%S"): END"
-    touch ehdn_outlier.failed
     exit 1
 fi
 
@@ -85,7 +82,6 @@ echo "ehdn_outlier exit code : $ehdn_outlier_exitcode"
 if [ $ehdn_outlier_exitcode != 0 ]
 then
     echo "$(date +"%F_%H-%M-%S"): END"
-    touch ehdn_outlier.failed
     exit 1
 fi
 
@@ -102,7 +98,6 @@ echo "ehdn_outlier exit code : $ehdn_outlier_exitcode"
 if [ $ehdn_outlier_exitcode != 0 ]
 then
     echo "$(date +"%F_%H-%M-%S"): END"
-    touch ehdn_outlier.failed
     exit 1
 fi
 

wrapper_expansionhunter.sh

@@ -24,7 +24,6 @@ if [ ! -f "$INPUTFILE" ]
 then
     echo "Input file '$INPUTFILE' does not exist"
     echo "$(date +"%F_%H-%M-%S"): END"
-    touch expansionhunter.failed
     exit 1
 fi
 
@@ -33,7 +32,6 @@ if [ -z "$OUTPUTPREFIX" ]
 then
     echo "Output prefix is not specified"
     echo "$(date +"%F_%H-%M-%S"): END"
-    touch expansionhunter.failed
     exit 1
 fi
 
@@ -65,7 +63,6 @@ echo "expansionhunter exit code : $expansionhunter_exitcode"
 if [ $expansionhunter_exitcode != 0 ]
 then
     echo "$(date +"%F_%H-%M-%S"): END"
-    touch expansionhunter.failed
     exit 1
 fi
 

wrapper_gangstr.sh

@@ -23,7 +23,6 @@ if [ ! -f "$INPUTFILE" ]
 then
     echo "Input file '$INPUTFILE' does not exist"
     echo "$(date +"%F_%H-%M-%S"): END"
-    touch gangstr.failed
     exit 1
 fi
 
@@ -32,7 +31,6 @@ if [ -z "$OUTPUTPREFIX" ]
 then
     echo "Output prefix is not specified"
     echo "$(date +"%F_%H-%M-%S"): END"
-    touch gangstr.failed
     exit 1
 fi
 
@@ -64,7 +62,6 @@ echo "gangstr exit code : $gangstr_exitcode"
 if [ $gangstr_exitcode != 0 ]
 then
     echo "$(date +"%F_%H-%M-%S"): END"
-    touch gangstr.failed
     exit 1
 fi
 

wrapper_hipstr.sh

@@ -31,7 +31,6 @@ if [ ! -f "$INPUTFILE" ]
 then
     echo "Input file '$INPUTFILE' does not exist"
     echo "$(date +"%F_%H-%M-%S"): END"
-    touch hipstr.failed
     exit 1
 fi
 
@@ -40,7 +39,6 @@ if [ -z "$OUTPUTFILE" ]
 then
     echo "Output file is not specified"
     echo "$(date +"%F_%H-%M-%S"): END"
-    touch hipstr.failed
     exit 1
 fi
 
@@ -60,7 +58,6 @@ echo "hipstr exit code : $hipstr_exitcode"
 if [ $hipstr_exitcode != 0 ]
 then
     echo "$(date +"%F_%H-%M-%S"): END"
-    touch hipstr.failed
     exit 1
 fi
 

wrapper_lobstr.sh

@@ -31,7 +31,6 @@ if [ ! -f "$INPUTFILE" ]
 then
     echo "Input file '$INPUTFILE' does not exist"
     echo "$(date +"%F_%H-%M-%S"): END"
-    touch lobstr.failed
     exit 1
 fi
 
@@ -40,7 +39,6 @@ if [ -z "$OUTPUTPREFIX" ]
 then
     echo "Output prefix is not specified"
     echo "$(date +"%F_%H-%M-%S"): END"
-    touch lobstr.failed
     exit 1
 fi
 
@@ -70,7 +68,6 @@ echo "lobstr exit code : $lobstr_exitcode"
 if [ $lobstr_exitcode != 0 ]
 then
     echo "$(date +"%F_%H-%M-%S"): END"
-    touch lobstr.failed
     exit 1
 fi
 

wrapper_stretch.sh

@@ -24,7 +24,6 @@ if [ ! -f "$INPUTFILE" ]
 then
     echo "Input file '$INPUTFILE' does not exist"
     echo "$(date +"%F_%H-%M-%S"): END"
-    touch stretch.failed
     exit 1
 fi
 
@@ -33,7 +32,6 @@ if [ -z "$OUTPUTPREFIX" ]
 then
     echo "Output prefix is not specified"
     echo "$(date +"%F_%H-%M-%S"): END"
-    touch stretch.failed
     exit 1
 fi
 
@@ -56,7 +54,6 @@ echo "stretch exit code : $stretch_exitcode"
 if [ $stretch_exitcode != 0 ]
 then
     echo "$(date +"%F_%H-%M-%S"): END"
-    touch stretch.failed
     exit 1
 fi
 

wrapper_strscan.sh

@@ -31,7 +31,6 @@ if [ ! -f "$INPUTFILE" ]
 then
     echo "Input file '$INPUTFILE' does not exist"
     echo "$(date +"%F_%H-%M-%S"): END"
-    touch strscan.failed
     exit 1
 fi
 
@@ -40,7 +39,6 @@ if [ -z "$OUTPUTPREFIX" ]
 then
     echo "Output prefix is not specified"
     echo "$(date +"%F_%H-%M-%S"): END"
-    touch strscan.failed
     exit 1
 fi
 
@@ -61,7 +59,6 @@ echo "strscan exit code : $strscan_exitcode"
 if [ $strscan_exitcode != 0 ]
 then
     echo "$(date +"%F_%H-%M-%S"): END"
-    touch gangstr.failed
     exit 1
 fi
 

wrapper_transfer.sh

@@ -24,7 +24,6 @@ if [ ! -f "$INPUTFILE" ]
 then
     echo "Input file '$INPUTFILE' does not exist"
     echo "$(date +"%F_%H-%M-%S"): END"
-    touch transfer.failed
     exit 1
 fi
 
@@ -33,7 +32,6 @@ if [ -z "$OUTPUTDIR" ]
 then
     echo "Output directory is not specified"
     echo "$(date +"%F_%H-%M-%S"): END"
-    touch transfer.failed
     exit 1
 fi
 
@@ -51,7 +49,6 @@ echo "transfer exit code : $transfer_exitcode"
 if [ $transfer_exitcode != 0 ]
 then
     echo "$(date +"%F_%H-%M-%S"): END"
-    touch transfer.failed
     exit 1
 fi
 

wrapper_tredparse.sh

@@ -24,7 +24,6 @@ if [ ! -f "$INPUTFILE" ]
 then
     echo "Input file '$INPUTFILE' does not exist"
     echo "$(date +"%F_%H-%M-%S"): END"
-    touch tredparse.failed
     exit 1
 fi
 
@@ -33,7 +32,6 @@ if [ -z "$OUTPUTDIR" ]
 then
     echo "Output directory is not specified"
     echo "$(date +"%F_%H-%M-%S"): END"
-    touch tredparse.failed
     exit 1
 fi
 
@@ -51,7 +49,6 @@ echo "tredparse exit code : $tredparse_exitcode"
 if [ $tredparse_exitcode != 0 ]
 then
     echo "$(date +"%F_%H-%M-%S"): END"
-    touch tredparse.failed
     exit 1
 fi