STR detection pipeline
- ASDP PIPELINE
- Author: anne-sophie.denomme-pichon@u-bourgogne.fr
- Version: 0.0.1
- Licence: FIXME
- Description: How to launch scripts to get STR genotype from genomes on all the locus tested
- Create genomes.list
- Specify output file in launch_pipeline.sh Warning, don't overwrite existing files
- Launch launch_pipeline.sh
nohup ./launch_pipeline.sh &
Dependencies :
- genomes.list
- pipeline.sh
- wrapper_delete.sh
- wrapper_ehdn.sh
- wrapper_expansionhunter.sh
- wrapper_gangstre.sh
- wrapper_transfer.sh
- wrapper_tredparse.sh
- Launch getResults.py