README.md 642 Bytes

STR detection pipeline

  • ASDP PIPELINE
  • Author: anne-sophie.denomme-pichon@u-bourgogne.fr
  • Version: 0.0.1
  • Licence: FIXME
  • Description: How to launch scripts to get STR genotype from genomes on all the locus tested
  1. Create genomes.list
  2. Specify output file in launch_pipeline.sh. Warning, don't overwrite existing files
  3. Launch launch_pipeline.sh : nohup ./launch_pipeline.sh &. Dependencies :
    • genomes.list
    • pipeline.sh
    • wrapper_delete.sh
    • wrapper_ehdn.sh
    • wrapper_expansionhunter.sh
    • wrapper_gangstre.sh
    • wrapper_transfer.sh
    • wrapper_tredparse.sh
  4. Launch getResults.py