STR detection pipeline
- ASDP PIPELINE
- Author: anne-sophie.denomme-pichon@u-bourgogne.fr
- Version: 0.0.1
- Licence: FIXME
- Description: How to launch scripts to get STR genotype from genomes on all the locus tested
- Create
genomes.list
- Specify output file in
launch_pipeline.sh
. Warning, don't overwrite existing files - Launch launch_pipeline.sh :
nohup ./launch_pipeline.sh &
. Dependencies :genomes.list
pipeline.sh
wrapper_delete.sh
wrapper_ehdn.sh
wrapper_expansionhunter.sh
wrapper_gangstre.sh
wrapper_transfer.sh
wrapper_tredparse.sh
- Launch
getResults.py