STR detection pipeline

• ASDP PIPELINE
• Author: anne-sophie.denomme-pichon@u-bourgogne.fr
• Version: 0.0.1
• Licence: FIXME
• Description: How to launch scripts to get STR genotype from genomes on all the locus tested

1. Create genomes.list
2. Specify output file in launch_pipeline.sh. Warning, don't overwrite existing files
3. Launch launch_pipeline.sh : nohup ./launch_pipeline.sh &. Dependencies :
   • genomes.list
   • pipeline.sh
   • wrapper_delete.sh
   • wrapper_ehdn.sh
   • wrapper_expansionhunter.sh
   • wrapper_gangstre.sh
   • wrapper_transfer.sh
   • wrapper_tredparse.sh
4. Launch getResults.py