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U
Upsampling
Commit 49ed6da7 authored by Anne-Sophie Denommé-Pichon's avatar Anne-Sophie Denommé-Pichon
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launch_upsampling.sh
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## Author: Anne-Sophie Denommé-Pichon
## Description: script to launch the wrapper to upsample data
READ_ID="@HISEQ2:C88CYACXX:7:1213:21186:56408"
INPUTFILE="/work/gad/shared/analyse/STR/Data/dijen402/dijen402.R2.fastq"
READ_ID="@V1:1:HKFJ7DSXX:1:2165:25825:9236/2"
#READ_ID="@HISEQ2:C88CYACXX:7:1213:21186:56408"
INPUTFILE="/work/gad/shared/analyse/STR/Data/upsampling/dijen402.R2.newread.fastq"
SAMPLE="$(basename -s .fastq "$INPUTFILE")"
OUTPUTDIR="/work/gad/shared/analyse/STR/Data/upsampling"
COMPUTE_QUEUE="batch"
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