diff --git a/data/integrase.tsv.csv b/data/integrase.tsv.csv index 3f0741f806a78b7fe7923a04ba9d0140f4d504c9..f5d515e77b5f0e399a30c971ee8c419a668346f3 100755 --- a/data/integrase.tsv.csv +++ b/data/integrase.tsv.csv @@ -1,222 +1,191 @@ -#integrase - -Position ,Position ,AA,Nucléotides,,CONCLUSION -AA,nucléotides,SAUVAGE,,AA FINAL, -49,145,A,GCT,A, -49,145,A,GCC,A,WT -49,145,A,GCA,A, -49,145,A,GCG,A, -49,145,A,GGT,G,MUTE -49,145,A,GGC,G,MUTE -49,145,A,GGG,G,MUTE -49,145,A,GGA,G,MUTE - -66,196,T,ACT,T, -66,196,T,ACC,T, -66,196,T,ACA,T,WT -66,196,T,ACG,T, -66,196,T,AAA,K,MUTE -66,196,T,AAG,K,MUTE -66,196,T,ATT,I,MUTE -66,196,T,ATC,I,MUTE -66,196,T,ATA,I,MUTE -66,196,T,GCT,A,MUTE -66,196,T,GCC,A,MUTE -66,196,T,GCA,A,MUTE -66,196,T,GCG,A,MUTE - -74,220,L,TTG,L, -74,220,L,TTA,L, -74,220,L,CTT,L, -74,220,L,CTC,L, -74,220,L,CTG,L,WT -74,220,L,CTA,L, -74,220,L,ATT,I,MUTE -74,220,L,ATC,I,MUTE -74,220,L,ATA,I,MUTE -74,220,L,ATG,M,MUTE - -92,274,E,GAA,E,WT -92,274,E,GAG,E, -92,274,E,CAA,Q,MUTE -92,274,E,CAG,Q,MUTE -92,274,E,GGA,G,MUTE -92,274,E,GGG,G,MUTE -92,274,E,GGT,G,MUTE -92,274,E,GGC,G,MUTE - -97,289,T,ACT,T, -97,289,T,ACA,T,WT -97,289,T,ACG,T, -97,289,T,ACC,T, -97,289,T,GCA,A,MUTE -97,289,T,GCT,A,MUTE -97,289,T,GCG,A,MUTE -97,289,T,GCC,A,MUTE - -118,352,G,GGT,G, -118,352,G,GGC,G,WT -118,352,G,GGA,G, -118,352,G,GGG,G, -118,352,G,CGT,R,MUTE -118,352,G,CGC,R,MUTE -118,352,G,CGA,R,MUTE -118,352,G,CGG,R,MUTE -118,352,G,AGA,R,MUTE -118,352,G,AGG,R,MUTE - -121,361,F,TTT,F, -121,361,F,TTC,F,WT -121,361,F,TAT,Y,MUTE -121,361,F,TAC,Y,MUTE - -138,412,E,GAA,E,WT -138,412,E,GAG,E, -138,412,E,AAA,K,MUTE -138,412,E,AAG,K,MUTE -138,412,E,GCT,A,MUTE -138,412,E,GCC,A,MUTE -138,412,E,GCA,A,MUTE -138,412,E,GCG,A,MUTE -138,412,E,ACT,T,MUTE -138,412,E,ACC,T,MUTE -138,412,E,ACA,T,MUTE -138,412,E,ACG,T,MUTE - -140,418,G,GGT,G, -140,418,G,GGC,G, -140,418,G,GGA,G,WT -140,418,G,GGG,G, -140,418,G,GCT,A,MUTE -140,418,G,GCC,A,MUTE -140,418,G,GCA,A,MUTE -140,418,G,GCG,A,MUTE -140,418,G,TGT,C,MUTE -140,418,G,TGC,C,MUTE -140,418,G,TCT,S,MUTE -140,418,G,TCC,S,MUTE -140,418,G,TCA,S,MUTE -140,418,G,TCG,S,MUTE -140,418,G,AGT,S,MUTE -140,418,G,AGC,S,MUTE - -143,427,Y,TAT,Y, -143,427,Y,TAC,Y,WT -143,427,Y,GCT,A,MUTE -143,427,Y,GCC,A,MUTE -143,427,Y,GCA,A,MUTE -143,427,Y,GCG,A,MUTE -143,427,Y,TGT,C,MUTE -143,427,Y,TGC,C,MUTE -143,427,Y,TCT,S,MUTE -143,427,Y,TCC,S,MUTE -143,427,Y,TCA,S,MUTE -143,427,Y,TCG,S,MUTE -143,427,Y,AGT,S,MUTE -143,427,Y,AGC,S,MUTE -143,427,Y,GGT,G,MUTE -143,427,Y,GGC,G,MUTE -143,427,Y,GGA,G,MUTE -143,427,Y,GGG,G,MUTE -143,427,Y,CAT,H,MUTE -143,427,Y,CAC,H,MUTE -143,427,Y,CGT,R,MUTE -143,427,Y,CGC,R,MUTE -143,427,Y,CGA,R,MUTE -143,427,Y,CGG,R,MUTE -143,427,Y,AGA,R,MUTE -143,427,Y,AGG,R,MUTE - -145,433,P,CCT,P, -145,433,P,CCC,P,WT -145,433,P,CCA,P, -145,433,P,CCG,P, -145,433,P,TCC,S,MUTE -145,433,P,TCA,S,MUTE -145,433,P,TCG,S,MUTE -145,433,P,AGT,S,MUTE -145,433,P,AGC,S,MUTE -145,433,P,TCT,S,MUTE -147,439,S,TCT,S, -147,439,S,TCC,S, -147,439,S,TCA,S, -147,439,S,TCG,S, -147,439,S,AGT,S,WT -147,439,S,AGC,S, -147,439,S,GGT,G,MUTE -147,439,S,GGC,G,MUTE -147,439,S,GGA,G,MUTE -147,439,S,GGG,G,MUTE -148,442,Q,CAA,Q,WT -148,442,Q,CAG,Q,WT -148,442,Q,GAA,E,MUTE -148,442,Q,GAG,E,MUTE -148,442,Q,GGT,G,MUTE -148,442,Q,GGT,G,MUTE -148,442,Q,GGC,G,MUTE -148,442,Q,GGA,G,MUTE -148,442,Q,GGG,G,MUTE -148,442,Q,CAC,H,MUTE -148,442,Q,CAT,H,MUTE -148,442,Q,AAA,K,MUTE -148,442,Q,AAG,K,MUTE -148,442,Q,CGA,R,MUTE -148,442,Q,CGG,R,MUTE -148,442,Q,AGA,R,MUTE -148,442,Q,AGG,R,MUTE -151,451,V,GTT,V, -151,451,V,GTC,V, -151,451,V,GTA,V,WT -151,451,V,GTG,V, -151,451,V,TTG,L,MUTE -151,451,V,TTA,L,MUTE -151,451,V,CTT,L,MUTE -151,451,V,CTC,L,MUTE -151,451,V,CTG,L,MUTE -151,451,V,CTA,L,MUTE -153,457,S,TCT,S,WT -153,457,S,TCC,S, -153,457,S,TCA,S, -153,457,S,TCG,S, -153,457,S,AGT,S, -153,457,S,AGC,S, -153,457,S,TTT,F,MUTE -153,457,S,TTC,F,MUTE -153,457,S,TAT,Y,MUTE -153,457,S,TAC,Y,MUTE -155,463,N,AAT,N,WT -155,463,N,AAC,N, -155,463,N,CAT,H,MUTE -155,463,N,CAC,H,MUTE -155,463,N,TCC,S,MUTE -155,463,N,TCA,S,MUTE -155,463,N,TCG,S,MUTE -155,463,N,AGT,S,MUTE -155,463,N,AGC,S,MUTE -155,463,N,TCT,S,MUTE -155,463,N,ACT,T,MUTE -155,463,N,ACC,T,MUTE -155,463,N,ACA,T,MUTE -155,463,N,ACG,T,MUTE -157,469,E,GAA,E,WT -157,469,E,GAG,E, -157,469,E,CAA,Q,MUTE -157,469,E,CAG,Q,MUTE -230,688,S,TCT,S, -230,688,S,TCC,S, -230,688,S,TCA,S, -230,688,S,TCG,S, -230,688,S,AGT,S, -230,688,S,AGC,S,WT -230,688,S,GGT,G,MUTE -230,688,S,GGC,G,MUTE -230,688,S,GGA,G,MUTE -230,688,S,GGG,G,MUTE -230,688,S,CGA,R,MUTE -230,688,S,CGG,R,MUTE -230,688,S,AGA,R,MUTE -230,688,S,AGG,R,MUTE -263,787,R,AGG,R, -263,787,R,AGA,R,WT -263,787,R,AAA,K,MUTE -263,787,R,AAG,K,MUTE +#integrase + +Position ,Position ,AA,Nucléotides,,CONCLUSION +AA,nucléotides,SAUVAGE,,AA FINAL, + + + +92,274,E,GAA,E,WT + + + + +92,274,E,GGG,G,MUTE +92,274,E,GGT,G,MUTE +92,274,E,GGC,G,MUTE + + +97,289,T,ACA,T,WT + + +97,289,T,GCA,A,MUTE +97,289,T,GCT,A,MUTE +97,289,T,GCG,A,MUTE +97,289,T,GCC,A,MUTE + + +118,352,G,GGC,G,WT + + +118,352,G,CGT,R,MUTE +118,352,G,CGC,R,MUTE +118,352,G,CGA,R,MUTE +118,352,G,CGG,R,MUTE +118,352,G,AGA,R,MUTE +118,352,G,AGG,R,MUTE + + +121,361,F,TTC,F,WT +121,361,F,TAT,Y,MUTE +121,361,F,TAC,Y,MUTE + +138,412,E,GAA,E,WT + +138,412,E,AAA,K,MUTE +138,412,E,AAG,K,MUTE +138,412,E,GCT,A,MUTE +138,412,E,GCC,A,MUTE +138,412,E,GCA,A,MUTE +138,412,E,GCG,A,MUTE +138,412,E,ACT,T,MUTE +138,412,E,ACC,T,MUTE +138,412,E,ACA,T,MUTE +138,412,E,ACG,T,MUTE + + + +140,418,G,GGA,G,WT + +140,418,G,GCT,A,MUTE +140,418,G,GCC,A,MUTE +140,418,G,GCA,A,MUTE +140,418,G,GCG,A,MUTE +140,418,G,TGT,C,MUTE +140,418,G,TGC,C,MUTE +140,418,G,TCT,S,MUTE +140,418,G,TCC,S,MUTE +140,418,G,TCA,S,MUTE +140,418,G,TCG,S,MUTE +140,418,G,AGT,S,MUTE +140,418,G,AGC,S,MUTE + + +143,427,Y,TAC,Y,WT +143,427,Y,GCT,A,MUTE +143,427,Y,GCC,A,MUTE +143,427,Y,GCA,A,MUTE +143,427,Y,GCG,A,MUTE +143,427,Y,TGT,C,MUTE +143,427,Y,TGC,C,MUTE +143,427,Y,TCT,S,MUTE +143,427,Y,TCC,S,MUTE +143,427,Y,TCA,S,MUTE +143,427,Y,TCG,S,MUTE +143,427,Y,AGT,S,MUTE +143,427,Y,AGC,S,MUTE +143,427,Y,GGT,G,MUTE +143,427,Y,GGC,G,MUTE +143,427,Y,GGA,G,MUTE +143,427,Y,GGG,G,MUTE +143,427,Y,CAT,H,MUTE +143,427,Y,CAC,H,MUTE +143,427,Y,CGT,R,MUTE +143,427,Y,CGC,R,MUTE +143,427,Y,CGA,R,MUTE +143,427,Y,CGG,R,MUTE +143,427,Y,AGA,R,MUTE +143,427,Y,AGG,R,MUTE + + +145,433,P,CCC,P,WT + + +145,433,P,TCC,S,MUTE +145,433,P,TCA,S,MUTE +145,433,P,TCG,S,MUTE +145,433,P,AGT,S,MUTE +145,433,P,AGC,S,MUTE +145,433,P,TCT,S,MUTE + + + + +147,439,S,AGT,S,WT + +147,439,S,GGT,G,MUTE +147,439,S,GGC,G,MUTE +147,439,S,GGA,G,MUTE +147,439,S,GGG,G,MUTE +148,442,Q,CAA,Q,WT +148,442,Q,CAG,Q,WT +148,442,Q,GAA,E,MUTE +148,442,Q,GAG,E,MUTE +148,442,Q,GGT,G,MUTE +148,442,Q,GGT,G,MUTE +148,442,Q,GGC,G,MUTE +148,442,Q,GGA,G,MUTE +148,442,Q,GGG,G,MUTE +148,442,Q,CAC,H,MUTE +148,442,Q,CAT,H,MUTE +148,442,Q,AAA,K,MUTE +148,442,Q,AAG,K,MUTE +148,442,Q,CGA,R,MUTE +148,442,Q,CGG,R,MUTE +148,442,Q,AGA,R,MUTE +148,442,Q,AGG,R,MUTE + + +151,451,V,GTA,V,WT + +151,451,V,TTG,L,MUTE +151,451,V,TTA,L,MUTE +151,451,V,CTT,L,MUTE +151,451,V,CTC,L,MUTE +151,451,V,CTG,L,MUTE +151,451,V,CTA,L,MUTE +153,457,S,TCT,S,WT + + + + + +153,457,S,TTT,F,MUTE +153,457,S,TTC,F,MUTE +153,457,S,TAT,Y,MUTE +153,457,S,TAC,Y,MUTE +155,463,N,AAT,N,WT + +155,463,N,CAT,H,MUTE +155,463,N,CAC,H,MUTE +155,463,N,TCC,S,MUTE +155,463,N,TCA,S,MUTE +155,463,N,TCG,S,MUTE +155,463,N,AGT,S,MUTE +155,463,N,AGC,S,MUTE +155,463,N,TCT,S,MUTE +155,463,N,ACT,T,MUTE +155,463,N,ACC,T,MUTE +155,463,N,ACA,T,MUTE +155,463,N,ACG,T,MUTE +157,469,E,GAA,E,WT + +157,469,E,CAA,Q,MUTE +157,469,E,CAG,Q,MUTE + + + + + +230,688,S,AGC,S,WT +230,688,S,GGT,G,MUTE +230,688,S,GGC,G,MUTE +230,688,S,GGA,G,MUTE +230,688,S,GGG,G,MUTE +230,688,S,CGA,R,MUTE +230,688,S,CGG,R,MUTE +230,688,S,AGA,R,MUTE +230,688,S,AGG,R,MUTE + +263,787,R,AGA,R,WT +263,787,R,AAA,K,MUTE +263,787,R,AAG,K,MUTE