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gad-public
pharmAnnot
Commits
e2416800
Commit
e2416800
authored
Jun 22, 2018
by
Simon Verdez
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ajout profondeur
parent
eeb9a1cf
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create_html_v2.py
create_html_v2.py
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create_html_v2.py
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e2416800
...
...
@@ -23,6 +23,7 @@ body = body.append(htmltag.H2('Variants pharmgkb'))
data
=
get_data
(
"/work/gad/sv347413/epilepsie/Pipeline/tableau pharmgkb.ods"
)
vcf_reader_SNP
=
VariantFile
(
sys
.
argv
[
1
])
vcf_reader_CNV
=
VariantFile
(
sys
.
argv
[
2
])
BAM_FILE
=
VariantFile
(
sys
.
argv
[
4
])
Report_HLA
=
open
(
sys
.
argv
[
3
],
"r"
)
for
record
in
vcf_reader_SNP
.
fetch
():
...
...
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