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gad-public
pharmAnnot
Commits
22d5f685
Commit
22d5f685
authored
3 years ago
by
simon verdez
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change README
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ad81a1c9
public
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22d5f685
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@@ -64,4 +64,4 @@ https://ftp-trace.ncbi.nlm.nih.gov/giab/ftp/data/NA12878/Nebraska_NA12878_HG001_
#### Data test
bash Extract_PharmGKB_Variants.sh -p data_test/PharmGKB_Epilepsy.tsv -b data_test/NA12878.5gene.bam -s
<path
to
HLAscan
files
>
-v data_test/NIST-hg001-7001-b-gatk.vcf -o data_test/
\ No newline at end of file
bash Extract_PharmGKB_Variants.sh -p
<path
/
to
/
clinical_annotations
.
tsv
>
-b data_test/NA12878.5gene.bam -s
<path
to
HLAscan
files
>
-v data_test/NIST-hg001-7001-b-gatk.vcf -o data_test/
\ No newline at end of file
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