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pharmAnnot
Commit 22d5f685 authored by simon verdez's avatar simon verdez
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change README

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Readme.md
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...@@ -64,4 +64,4 @@ https://ftp-trace.ncbi.nlm.nih.gov/giab/ftp/data/NA12878/Nebraska_NA12878_HG001_ ...@@ -64,4 +64,4 @@ https://ftp-trace.ncbi.nlm.nih.gov/giab/ftp/data/NA12878/Nebraska_NA12878_HG001_
#### Data test #### Data test
bash Extract_PharmGKB_Variants.sh -p data_test/PharmGKB_Epilepsy.tsv -b data_test/NA12878.5gene.bam -s <path to HLAscan files> -v data_test/NIST-hg001-7001-b-gatk.vcf -o data_test/ bash Extract_PharmGKB_Variants.sh -p <path/to/clinical_annotations.tsv> -b data_test/NA12878.5gene.bam -s <path to HLAscan files> -v data_test/NIST-hg001-7001-b-gatk.vcf -o data_test/
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