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db55c09c · Yannis Duffourd · db55c09c · db55c09c
Commit db55c09c authored Jul 02, 2021 by Yannis Duffourd
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scripts_data.bash scripts_data.bash +10 -0

scripts_softs.bash scripts_softs.bash +14 -0

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--- a/scripts_data.bash
+++ b/scripts_data.bash
+#!/bin/bash
+
+# data to get
+cd ~/
+
+# https://cloud.u-bourgogne.fr/index.php/s/FBeZ8gPqfMTJtPp
+curl -u FBeZ8gPqfMTJtPp: "https://cloud.u-bourgogne.fr/public.php/webdav/FST.tar.gz" --output FST.tar.gz
+
+# untar
+tar -xzvf FST.tar.gz
--- a/scripts_softs.bash
+++ b/scripts_softs.bash
+#!/bin/bash
+
+# softs needed
+# bwa
+conda install -c bioconda -y bwa
+
+# samtools
+conda install -c bioconda -y samtools
+
+# picard tools
+conda install -c bioconda -y picard
+
+# GATK 3
+conda install -c bioconda -y gatk