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Commit cab9082c authored by Anne-Sophie Denommé-Pichon's avatar Anne-Sophie Denommé-Pichon
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Change input file to be easily applied to dijen

parent 65481d14
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launch_expansionhunter.sh
View file @ cab9082c
......@@ -14,7 +14,7 @@
## last revision date : 20191126
## Known bugs : None
INPUTFILE=/work/gad/shared/analyse/STR/Data/dijen017/offtargetdijen017/dijen017.offtarget.bam
INPUTFILE=/work/gad/shared/analyse/STR/Data/dijen561.bam
DATE="$(date +"%F_%H-%M-%S")"
OUTPUTDIR="/work/gad/shared/analyse/STR/ExpansionHunter/$DATE"
OUTPUTPREFIX="$OUTPUTDIR/$(basename "$INPUTFILE")_$DATE"
......
launch_tredparse.sh
View file @ cab9082c
......@@ -14,7 +14,7 @@
## last revision date : 20191126
## Known bugs : None
INPUTFILE=/work/gad/shared/analyse/STR/Data/dijen017/offtargetdijen017/dijen017.offtarget.bam
INPUTFILE=/work/gad/shared/analyse/STR/Data/dijen561.bam
DATE="$(date +"%F_%H-%M-%S")"
OUTPUTDIR="/work/gad/shared/analyse/STR/Tredparse/$DATE"
LOGFILE="$OUTPUTDIR/$(basename "$INPUTFILE")_$DATE.log"
......
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