Skip to content

S
STR
Commit cab9082c authored by Anne-Sophie Denommé-Pichon's avatar Anne-Sophie Denommé-Pichon
Browse files
Options

Change input file to be easily applied to dijen

parent 65481d14
Show whitespace changes
Inline Side-by-side
Showing with 2 additions and 2 deletions
launch_expansionhunter.sh
View file @ cab9082c
...@@ -14,7 +14,7 @@ ...@@ -14,7 +14,7 @@
## last revision date : 20191126 ## last revision date : 20191126
## Known bugs : None ## Known bugs : None
INPUTFILE=/work/gad/shared/analyse/STR/Data/dijen017/offtargetdijen017/dijen017.offtarget.bam INPUTFILE=/work/gad/shared/analyse/STR/Data/dijen561.bam
DATE="$(date +"%F_%H-%M-%S")" DATE="$(date +"%F_%H-%M-%S")"
OUTPUTDIR="/work/gad/shared/analyse/STR/ExpansionHunter/$DATE" OUTPUTDIR="/work/gad/shared/analyse/STR/ExpansionHunter/$DATE"
OUTPUTPREFIX="$OUTPUTDIR/$(basename "$INPUTFILE")_$DATE" OUTPUTPREFIX="$OUTPUTDIR/$(basename "$INPUTFILE")_$DATE"
......
launch_tredparse.sh
View file @ cab9082c
...@@ -14,7 +14,7 @@ ...@@ -14,7 +14,7 @@
## last revision date : 20191126 ## last revision date : 20191126
## Known bugs : None ## Known bugs : None
INPUTFILE=/work/gad/shared/analyse/STR/Data/dijen017/offtargetdijen017/dijen017.offtarget.bam INPUTFILE=/work/gad/shared/analyse/STR/Data/dijen561.bam
DATE="$(date +"%F_%H-%M-%S")" DATE="$(date +"%F_%H-%M-%S")"
OUTPUTDIR="/work/gad/shared/analyse/STR/Tredparse/$DATE" OUTPUTDIR="/work/gad/shared/analyse/STR/Tredparse/$DATE"
LOGFILE="$OUTPUTDIR/$(basename "$INPUTFILE")_$DATE.log" LOGFILE="$OUTPUTDIR/$(basename "$INPUTFILE")_$DATE.log"
......
Markdown is supported
0% or
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment